Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H01
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.29 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.5  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   4.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   6.2  

>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 347 NFLKDFVHSNQWHTIKKNSFQIKITQYK 264
           N L   +H +QW  I+K SF ++++ YK
Sbjct: 245 NKLTRLLHKSQWDLIEKLSFPLRLSDYK 272


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 351 KCPKILSENNEDYALLKTNVIQKEVQN 431
           +CPK L  NN+ Y LLK     KEV N
Sbjct: 177 QCPKYLYWNNKSY-LLKKKRFLKEVGN 202


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 53  LEHSTLSIMPHNALLCCNWKTTYNAKKLFPQPIMS 157
           L +S+ SIM H+ L     + +++ K  FP P+ S
Sbjct: 562 LGNSSHSIMRHHTLGTLRSRPSFSEKSTFPAPLTS 596


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -3

Query: 402 FSIKHSLRYFQTEF*GI*KLSKGFCPFQSMAYN*KKQLSD*NYTI*NSFLAMAYSLSRLQ 223
           F  ++ +  F+ +F  +  + + +  FQ      K Q S  +++  N F+    + SR +
Sbjct: 555 FFNEYPILKFRCDFENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRFE 614

Query: 222 SLKTSKRAD 196
             K SKR+D
Sbjct: 615 YEKESKRSD 623


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 2   GRPMTFESARLCEALL*LEHSTLSIMPHNAL---LCCNWKTTYNAKKLFPQPIMS 157
           G+P+   S  LC A   L  + L   P NAL   LCC+    +     F +  +S
Sbjct: 257 GKPVFAYSKHLCGAATDLTLNCLKSSPPNALVIALCCHHHCRWRTLSTFAREQLS 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,007
Number of Sequences: 5004
Number of extensions: 32429
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)