Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H01
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0330 - 16816497-16819952                                         32   0.22 
10_08_0333 - 16850267-16851802                                         31   0.66 
06_03_1219 - 28491185-28494415                                         29   2.0  
08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238           28   3.5  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    27   8.2  
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118     27   8.2  
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145...    27   8.2  

>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 99   HKSALCGIMLNVECSNYSNASHNR 28
            + S LCG+ LN+ C+NY+ AS  R
Sbjct: 1058 NNSGLCGLPLNISCTNYALASDER 1081


>10_08_0333 - 16850267-16851802
          Length = 511

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 99  HKSALCGIMLNVECSNYSNASHNR 28
           H S LCG  LN+ C+N S AS  R
Sbjct: 418 HNSGLCGPPLNISCTNASVASDER 441


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -3

Query: 87  LCGIMLNVECSNYSNASHNRALSKVIGR 4
           LCG++++V CSN   A ++ + SKV+G+
Sbjct: 670 LCGLVISVPCSNKFEARYHTS-SKVVGK 696


>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
          Length = 852

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 350 ENFLKDFVHSNQWHTIKKNSFQIKITQYKI 261
           E +LK+ VH N    ++KNSF  +I ++K+
Sbjct: 406 EGYLKELVHRNMLQLVQKNSFG-RIRRFKM 434


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 380 VIFRQNFRAFENFLKDFVHSNQWHTIKK-NSFQIKITQYKILF*LW 246
           ++  + FRA +  L   V S +W+T ++ N  Q +  + KIL  LW
Sbjct: 408 IVMLKRFRAIKENLILMVASEKWNTYREDNQVQAQHVKEKILNDLW 453


>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
          Length = 325

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 39  KRCCSWNIQR*ALCRIMRSCAVIGKLP 119
           +RCCSW I+    CR  + CA   KLP
Sbjct: 287 RRCCSWKIKL-PKCRFPKCCAF--KLP 310


>02_03_0032 +
           14112354-14112417,14112471-14112549,14114435-14114551,
           14114721-14114802,14115734-14115868,14115948-14116123,
           14116219-14116370,14116433-14117622
          Length = 664

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 38  EALL*LEHSTLSIMPHNALLCCNWKTTYNAKKLFPQPIMSK 160
           +A+  ++ ST   +  N  +CC+   T+N K L P  I  +
Sbjct: 404 DAIAKIDSSTAKCVEQNIGICCSSSNTFNGKILNPFSISQR 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,848
Number of Sequences: 37544
Number of extensions: 170815
Number of successful extensions: 316
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)