Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_H01
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical ...    30   0.79 
AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical...    27   7.4  

>AF036705-7|AAB95174.1|  324|Caenorhabditis elegans Hypothetical
           protein F37C4.8 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 235 KPVTKLKDIKTCRHSPYVIN*SK 167
           KPV KLK +K C H P  IN +K
Sbjct: 239 KPVEKLKRVKDCEHQPKRINSNK 261


>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 264 FILCNFNLKAVFFNC-MPLIGMDKIL*KVF 350
           FIL NF+LK  F NC   L+G +K L K+F
Sbjct: 111 FILKNFDLKFGFSNCSFQLVGFNKKLIKLF 140


>AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical
           protein F36H12.2 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 297 FFNCMPLI--GMDKIL*KVFKCPKILSENNEDYALLKTNVIQKEVQNI*YIF 446
           F    P+I  G  +IL +  + P IL EN+ + +L ++ +   ++QNI +IF
Sbjct: 282 FLEDSPVIFTGSKEILRENHEIPNILKENSTERSLSQSLLNLLDIQNIGWIF 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,542,433
Number of Sequences: 27780
Number of extensions: 180305
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)