Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G22
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    27   8.7  

>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 211 PGDCIRDNRRSLDTYIRNCCSRNQSRSVEXLPELQRGRRTE*TVSRTF*AVFKVD 47
           P    R + RSL+   ++C    +  + E LP++ R  R + T S    A F  D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,310
Number of Sequences: 37544
Number of extensions: 165974
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)