Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G21
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    31   0.096
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    28   0.51 
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   1.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.6  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   2.7  

>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 30.7 bits (66), Expect = 0.096
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 90  EQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY 203
           +QR  AG       N+FRR       VA PF I Y IY
Sbjct: 34  QQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIY 71


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 YAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 218
           Y    + G   +++    ++ KVAP   I YL+YE  ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +3

Query: 78  YLAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRLSRKNPADF 257
           Y  H  R Y    SNG+  I   F+  +FK A    I  L +  + RE   L      DF
Sbjct: 342 YGLHSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITREASLLYCLPSTDF 400

Query: 258 E 260
           +
Sbjct: 401 Q 401


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 285  LQTMFIDHFQNQQGSSVIVCDA 220
            L ++ +DHFQN   SS  + DA
Sbjct: 940  LHSLIVDHFQNDSNSSADLLDA 961


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 262 FSKSAGFFRDSL*CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 125
           +SKS      S+  +  TP Y+  P     AT K LS+ +L I  +
Sbjct: 377 YSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKNLSQPILSITSV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,210
Number of Sequences: 5004
Number of extensions: 23257
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)