Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G21
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866...    28   3.5  
01_06_0624 - 30683249-30684631                                         28   3.5  
01_05_0225 - 19501643-19501903,19503974-19504477                       27   6.1  
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991...    27   8.1  
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    27   8.1  

>02_04_0414 -
           22685981-22686178,22686374-22686465,22686580-22686676,
           22686801-22686916,22687314-22687513,22687588-22687740,
           22687960-22688171,22688403-22688519,22688613-22688687,
           22688815-22688853,22689518-22689689,22689809-22690056,
           22690151-22690324,22690418-22690504
          Length = 659

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 133 ISSEDFVRAFLK*PRPSSLDT*YMKELKGSITDYHGRTLLILKMINK 273
           I  E F+R +L      S  T   K+LKGS++     T  +L +IN+
Sbjct: 80  IEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINE 126


>01_06_0624 - 30683249-30684631
          Length = 460

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 223 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 125
           C+ +  SY+  P+M+   +   + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153


>01_05_0225 - 19501643-19501903,19503974-19504477
          Length = 254

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 230 SVMLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 120
           S +LP+   +  VSN+E +      + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194


>01_05_0099 -
           18098169-18098390,18098878-18098972,18099063-18099131,
           18099277-18099352,18101412-18101524,18104137-18104185,
           18104540-18104572,18105446-18105552,18106892-18106990,
           18107122-18107203
          Length = 314

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 123 GIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRL 233
           GIP  +R    ++ +  P  +I +  YE + R  H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311


>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 180 FIIGYLIYEGVEREHHRLSRKNP 248
           F+IGYL++ G  ++ H + +K+P
Sbjct: 251 FVIGYLVFRGANKQKH-VFKKSP 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,766,629
Number of Sequences: 37544
Number of extensions: 134014
Number of successful extensions: 287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)