Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G21
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    43   1e-04
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    42   2e-04
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   1.8  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   1.8  
U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 87  HEQRAYAGAISNGIPNIFRRFR-ESVFKVAPPFIIGYLIYEGVEREHHRLSRKNPADFEN 263
           +EQ+AY G         F+ +  +  +   P  I  YL+Y+  ++ +   +RKNPADF N
Sbjct: 29  NEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYLLYDWAKKTNVAANRKNPADFAN 88

Query: 264 DQ 269
           DQ
Sbjct: 89  DQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 87  HEQRAYAGAISNGIPNIFRRFR-ESVFKVAPPFIIGYLIYEGVEREHHRLSRKNPADFEN 263
           +EQ+AY G         F+ +  +  +   P  I  YL+Y+  ++ +   +RKNPADF N
Sbjct: 29  NEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLLYDWAKKTNVAANRKNPADFAN 88

Query: 264 DQ 269
           D+
Sbjct: 89  DE 90


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 202 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 113
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 202 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 113
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923


>U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical
           protein F11D5.7 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -3

Query: 315 KLISTLNNFNLQTMFIDHF---QNQQGSSVIV 229
           K++STLNN+N++  F++      NQ G+++ +
Sbjct: 64  KILSTLNNYNVRLSFVNSIITTSNQVGNALSI 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,910,796
Number of Sequences: 27780
Number of extensions: 124234
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)