Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G19
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.9  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   3.3  

>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 331 EYRPVRIPNGLVVFRYFDCSRQTDVVVVC--RWILFGKM 221
           +YR +   NG+V     DC  +T+VV  C  RW+L  ++
Sbjct: 364 KYRVLSRQNGVVRSNCMDCLDRTNVVQSCIGRWVLTNQL 402


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +3

Query: 93  LHAIQTGSIYLEYIRTRGRAIFS-YSEFIYAN*LSEATMLLLFHIFP-----NKIHRQTT 254
           L AIQ   I+LEY RT  + ++S  S  I    ++  T LLL H++P     + +++   
Sbjct: 345 LPAIQNNIIFLEYSRTSKQGMWSILSPCIL---IAVYTNLLLQHLYPTPSFTSPVNQILC 401

Query: 255 TTSVWR 272
           +  +WR
Sbjct: 402 SAEIWR 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,788
Number of Sequences: 5004
Number of extensions: 67568
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)