Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G19
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   2e-04
SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)                  33   0.22 
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)                 30   2.0  
SB_55236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_9495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 58/261 (22%), Positives = 101/261 (38%), Gaps = 8/261 (3%)
 Frame = +2

Query: 71  IYXXXXXVTCYTDGLNILGIYPYQGKSHFFVFRVYLRELAKRGHNVTIISHFPEQDPPAN 250
           +Y        YT    I+ I P  G+SH+ V     +EL  RGH V +            
Sbjct: 151 LYVSTALSVIYTRSSKIVAI-PVYGQSHYRVVEKLSQELRSRGHEVIVFI-----GDGVK 204

Query: 251 YHDI-SLAGTIKITEDNQSVRNSY--W---SVFSAAFYLAISGKENCQVMLANKQVQELI 412
           Y D+ S     K+TE+ + +++    W   S  ++   LA+     C  +L + ++   +
Sbjct: 205 YGDVKSHTKRFKLTEEFKEMKSKQQEWLTSSYLNSNKKLALFDHLFCDALLNDSRIHAEL 264

Query: 413 KSKQKFDVVVVEQFNSDCALGVAYKLGAPAIGMSSHTLMPYHYKRLGIPYNP-SYVPFHF 589
            +      +V+     +C   VA  +  P + +S+  L  Y+ +  GIP  P SYVP + 
Sbjct: 265 NTAD----LVLSNLVFNCGSLVADMMDIPLVTVSTLELTVYNTEMYGIPACPLSYVPQYS 320

Query: 590 LEGGTKPSLFHRVERLXXXXXXXXXXXXVSQRSDQNTLAEY-FDDIPPLXELARNMKFHL 766
                   ++ RV+ L                      A+Y       + E    +   L
Sbjct: 321 SGLSGDMGVWDRVKNLGMYAANLWIKEAYFYPGYDELKAKYRIKPEKTIRESLMTVSLIL 380

Query: 767 LYHNFILTGSRLFPSNVIEVG 829
           +  +F+L  ++  P  V EVG
Sbjct: 381 MEADFVLAHAQPLPPFVKEVG 401


>SB_24817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 6/182 (3%)
 Frame = +2

Query: 104 TDGLNILGIYPYQGKSHFFVFRVYLRELAKRGHNVTIISHFPEQDPPAN--YHDISLAGT 277
           +D   I+G YP    S +   R   +ELA RGH VT++     +  P     H +     
Sbjct: 4   SDAAKIVG-YPMMAGSPYIGMRRIAQELAARGHEVTLLVSSIRKIKPTEGVTHAVYQVPV 62

Query: 278 IK-ITED--NQSVRNSYWSVFSAAFYLAISGKENCQVMLANKQVQELIKSKQKFDVVVVE 448
            K   E+  ++++ N   S  S+   +  + K  C+  L +  V + +K   KFD+++ +
Sbjct: 63  EKNYFEEMVSRTINNGIISELSSKTGMGAALKLFCEATLNSTDVIDPLK---KFDLIITD 119

Query: 449 QFNSDCALGVAYKLGAPAIGMSSHT-LMPYHYKRLGIPYNPSYVPFHFLEGGTKPSLFHR 625
             +  C   +A  L    +     T  +P  Y   G P  PSYVP        K +   R
Sbjct: 120 -CSMPCGAVLAEYLNLTRVDYCPGTPRIPLIYHFHG-PSFPSYVPLMMSGNTAKMNFLQR 177

Query: 626 VE 631
           V+
Sbjct: 178 VK 179


>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
          Length = 360

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 92  VTCYTDGLNILGIYPYQGKSHFFVFRVYLRELAKRGHNVTI 214
           + C   G+ I  + P  G+SH+ V      ELA RGH V++
Sbjct: 14  LACECSGIKI-AMMPQFGRSHYLVMSKLAEELASRGHEVSV 53


>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
          Length = 385

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 143 GKSHFFVFRVYLRELAKRGHNVTII 217
           G+SHF V      ELA+RGH V+++
Sbjct: 5   GQSHFLVMNKLAVELAERGHKVSVL 29


>SB_55236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 59  IMKLIYXXXXXVTCYTDGLNILGIYPYQGKSHFFVFRVYLRELAKRGH 202
           ++ +++       C +DG  I+G YP  G S +   +   +ELA RGH
Sbjct: 9   LLVVVFYAHLQTEC-SDGAKIVG-YPMMGGSQYIGMKRIAQELAARGH 54


>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2065

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 79   ITTSRYMLYRRAQYTWNISVPGEEPFFRIQS--LFTRIS*ARPQCYYYFTFSRTRSTGK 249
            +  S+ + ++R QY W++++PG+  F  + S   F R        +Y    SR R + +
Sbjct: 1337 LCNSQEIDWKRTQYIWSVALPGQTTFSDVTSGTFFARNDVITLDSFYLTPGSRVRCSAR 1395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,444,207
Number of Sequences: 59808
Number of extensions: 481286
Number of successful extensions: 1412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)