Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G19
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   2.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 678 ASGVIKTHWLNILMTSLRXKNWL 746
           A+G     W++ +MT LR + W+
Sbjct: 348 ANGQTGFPWIDAIMTQLREEGWI 370


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 401 QELIKSKQKFDVVVVEQFNSDCALGVAY 484
           +E +K    +  +VV+  N DC   +AY
Sbjct: 299 KEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 150 LFPWYGYIPSILSPSV 103
           LF W GY  S+L+P +
Sbjct: 411 LFLWLGYCNSLLNPII 426


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 754 EISSIVSQLHFNRVKAVPIQCD*SRR 831
           ++ ++V +L     K VP+QCD S +
Sbjct: 43  KMKTLVEELKSKPGKLVPLQCDLSNQ 68


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 555 SPTTHHTCPFISWRGELSHLSFTESRDCFLTSSLERFITL*ASGVIKTHWLNILM 719
           +PT   T   I   G +S L    S DC+   S  R   L   G IK+  L+I M
Sbjct: 60  TPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSW-RDSRLSFLGPIKSLSLSIKM 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,079
Number of Sequences: 438
Number of extensions: 5054
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)