Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G17
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    27   3.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   5.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   7.3  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   7.3  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   9.7  

>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 801 SCLV-VRSRYEAWLDFVAKVLWKHPNWLPRQEH*EQISMAQDLLARRRIHGYLWHVRREV 625
           SC++ VR+R   W +    +LW +      Q   ++I    +L A+   + Y W +++E 
Sbjct: 160 SCMLSVRARSTRWQNIEGSLLWVNRKLADYQPIFQKIDSLVELEAQEINYVYRWRLQQEH 219

Query: 624 A 622
           A
Sbjct: 220 A 220


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 497 PPHPNTASGKATFNTPERG*QFPGNFLVYAAQMERNSRIHE 619
           P HPN  S KA F+ P R      N  +    +++++   E
Sbjct: 462 PNHPNAISPKAKFSLPSRPSYHKDNSFISKQAIDKSNPFEE 502


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 486 PRLYHHIQTLLVEKPHSILLNAGDSFQGTFWYTLL 590
           PR+YHH    L++     +   G S  G   Y LL
Sbjct: 75  PRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLL 109


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -3

Query: 422 ESRVKVVVMYYIQSVQSFEGQNETVH-ITQKQTNLNDYKIH--FP-LIWK 285
           E+  K+ + Y    +Q F+ +NE VH I  K T   +   H   P LIW+
Sbjct: 99  ENNYKLHLRYSFSQLQDFDEENEAVHMIVPKDTYEFEVPYHADIPKLIWQ 148


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 414 RESRCNVLHPICTILRRAKRNC---THYPK 334
           R  +C+   PIC    ++KR C   TH+P+
Sbjct: 52  RRIKCDERKPICYNCIKSKRQCEGYTHFPR 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,575
Number of Sequences: 5004
Number of extensions: 73027
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)