Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G17
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   5.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEETSVNTPICKSNDSACL 476
           G V    +P   L++ DV+ YN     F+ T     + K N+  CL
Sbjct: 93  GGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVK-NNGTCL 137


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEET 431
           G V    +P + ++R D++ YN+    FE T
Sbjct: 98  GGVKMLHVPSDHIWRPDIVLYNNADGNFEVT 128


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEET 431
           G V    +P + ++R D++ YN+    FE T
Sbjct: 94  GGVEMLHVPSDHIWRPDIVLYNNADGNFEVT 124


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 360 LPFEGLYRLDVIHYNDFHARFEETSVNTPICKSN 461
           +P+  ++R D I YN+   ++    +NT +  S+
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSH 115


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 LFYYFILKNTFNYYRFQIKGKCI-L*SLRLVCFWV 342
           L  YF L+     +  Q+ G C+ L  L  V FW+
Sbjct: 203 LLVYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWL 237


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 677 FWPVVEFMVTYGMCVVR*HIHEFLSYV 597
           FW    +++   +C +R ++ E  SYV
Sbjct: 101 FWQQYPWVLGVSLCKIRAYVSEMSSYV 127


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEET 431
           G V    +P + ++R D++ YN+    +E T
Sbjct: 98  GGVKMLHVPSDHIWRPDIVLYNNADGNYEVT 128


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEET 431
           G V    +P E ++  D++ YN+    +E T
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNADGNYEVT 133


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 339 GNVYSFVLPFEGLYRLDVIHYNDFHARFEETSVNTPI 449
           G V +  +P E ++  D++ YN+    +E T +   I
Sbjct: 90  GGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 126


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 655 MNSTTGQKVLRHTYLLLMLLSWQPIWM 735
           M+S      LRH  +   +LSWQ  W+
Sbjct: 48  MDSNEPLLPLRHRRVTCDVLSWQSKWL 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,846
Number of Sequences: 438
Number of extensions: 5313
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)