Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G16
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    34   0.017
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   1.5  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         27   2.6  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   4.6  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   6.1  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 263 RIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGYIT 156
           R+ + NTV S+    AF+YN D++  NC  S+ Y T
Sbjct: 771 RVLWINTVQSDSTIKAFTYNVDTKQLNCIKSWKYKT 806


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 402 RSFVGEEVKVGSGCVIGAACTLTAPQILADNTVI 503
           ++ +   VK+G+ C I     + A  ++ DNT+I
Sbjct: 381 KAILANSVKIGNNCSIEDGAIVAAGVVIGDNTII 414


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 374 VTIDRLQFASNFENIVCTYKQWLWGILLFITLFMY 270
           +T+ + +F ++F N+   +  WL   +LF  + +Y
Sbjct: 61  ITLAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLY 95


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 372 HVGESNVFECRSFVGEEVKVGSGCVIGAACTL 467
           H+G  + FE R   G+   +  GC     CTL
Sbjct: 346 HLGTCDTFEERQIGGDRFNLFEGCPKAKTCTL 377


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 668 LVYYFCEQTYMK 703
           L+Y FCE+TY+K
Sbjct: 310 LIYLFCEETYLK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,648
Number of Sequences: 5004
Number of extensions: 44711
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)