Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G16
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein. 113 6e-25
CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein. 113 6e-25
BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein. 113 6e-25
AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein. 39 0.020
BX088650-16|CAM26307.1| 487|Homo sapiens synaptic Ras GTPase ac... 34 0.58
BX088650-15|CAM26306.1| 1284|Homo sapiens synaptic Ras GTPase ac... 34 0.58
BX088650-14|CAM26305.1| 1343|Homo sapiens synaptic Ras GTPase ac... 34 0.58
BX088650-13|CAM26304.1| 1299|Homo sapiens synaptic Ras GTPase ac... 34 0.58
AL713634-1|CAD28452.1| 902|Homo sapiens hypothetical protein pr... 34 0.58
AL662799-16|CAM25573.1| 487|Homo sapiens synaptic Ras GTPase ac... 34 0.58
AL662799-15|CAM25572.1| 1284|Homo sapiens synaptic Ras GTPase ac... 34 0.58
AL662799-14|CAI18276.2| 1343|Homo sapiens synaptic Ras GTPase ac... 34 0.58
AB067525-1|BAB67831.2| 1376|Homo sapiens KIAA1938 protein protein. 34 0.58
BC028124-1|AAH28124.1| 384|Homo sapiens chromosome 17 open read... 31 3.1
BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein. 31 5.4
AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens ... 31 5.4
>D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein.
Length = 190
Score = 113 bits (272), Expect = 6e-25
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Frame = +3
Query: 105 NIKILPGATVCAACXXXXXXXXXXXXXXHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 284
++KI PGA VC HP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 285 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 449
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 450 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 611
GA C L +++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein.
Length = 190
Score = 113 bits (272), Expect = 6e-25
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Frame = +3
Query: 105 NIKILPGATVCAACXXXXXXXXXXXXXXHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 284
++KI PGA VC HP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 285 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 449
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 450 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 611
GA C L +++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein.
Length = 190
Score = 113 bits (272), Expect = 6e-25
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Frame = +3
Query: 105 NIKILPGATVCAACXXXXXXXXXXXXXXHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKS 284
++KI PGA VC HP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 285 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 449
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 450 GAACTLTAPQILADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRLRK 611
GA C L +++ +NTVI+G++ R E+ Q LQLDFL K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein.
Length = 384
Score = 38.7 bits (86), Expect = 0.020
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Frame = +3
Query: 339 EVACKLESIYGHVG--ESNVFE-------CRSFVGEEVKVGSGCVIGAACTLTAPQILAD 491
++ CK+ES++ ++G F CRSF E I A T+ +
Sbjct: 104 QLVCKIESVHSNMGLPTPQTFRPWSLNSNCRSFTEENHMSACHHSISAQ---TSKHLFWA 160
Query: 492 NTVIWGSEHHVREALEKQPSQ---------LLQLDFLSKVMPNYHRLRKPNVHKRQPSRQ 644
N +I SEH ++ A+ Q + L+ SK + + +L+ P+ H PS+
Sbjct: 161 NKLIQASEHSLQRAINMQLNNGSAGQPIRSPLREAIPSKALCSEEQLQIPDAHSAPPSKS 220
Query: 645 SQEPSP 662
SQEPSP
Sbjct: 221 SQEPSP 226
>BX088650-16|CAM26307.1| 487|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 487
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 66 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 103
>BX088650-15|CAM26306.1| 1284|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1284
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 649 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 686
>BX088650-14|CAM26305.1| 1343|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1343
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>BX088650-13|CAM26304.1| 1299|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1299
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>AL713634-1|CAD28452.1| 902|Homo sapiens hypothetical protein
protein.
Length = 902
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 325 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 362
>AL662799-16|CAM25573.1| 487|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 487
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 66 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 103
>AL662799-15|CAM25572.1| 1284|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1284
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 649 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 686
>AL662799-14|CAI18276.2| 1343|Homo sapiens synaptic Ras GTPase
activating protein 1 homolog (rat) protein.
Length = 1343
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 708 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 745
>AB067525-1|BAB67831.2| 1376|Homo sapiens KIAA1938 protein protein.
Length = 1376
Score = 33.9 bits (74), Expect = 0.58
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 555 LLQLDFLSKVMPNYHR-LRKPNVHKRQPSRQSQEPSPKP 668
LL+L L +++ + LR PN+ +RQPSRQS+ P P+P
Sbjct: 741 LLKLGPLPRLLNDISTALRNPNI-QRQPSRQSERPRPQP 778
>BC028124-1|AAH28124.1| 384|Homo sapiens chromosome 17 open reading
frame 46 protein.
Length = 384
Score = 31.5 bits (68), Expect = 3.1
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Frame = +3
Query: 339 EVACKLESIYGHVG--ESNVF-------ECRSFVGEEVKVGSGCVIGAACTLTAPQILAD 491
++ CK+ES++ ++G F CRSF E I A T+ +
Sbjct: 104 QLVCKIESVHSNMGLPTPQTFRPWSLNSNCRSFTEENHMSACHHSISAQ---TSKHLFWA 160
Query: 492 NTVIWGSEHHVREALEKQ-----PSQLLQLDFLSKVMPN----YHRLRKPNVHKRQPSRQ 644
N +I SEH ++ A+ Q Q ++ + N +L+ P+ H P+
Sbjct: 161 NKLIQASEHSLQRAINMQLNNGSAGQPIRSPLREAIPTNALCSEEQLQIPDAHSAPPTTS 220
Query: 645 SQEPSP 662
SQ PSP
Sbjct: 221 SQAPSP 226
>BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein.
Length = 182
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 411 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 503
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
>AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens
cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
Mus musculus dynactin subunit p25 (p25) mRNA. ).
Length = 182
Score = 30.7 bits (66), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 411 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 503
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,359,801
Number of Sequences: 237096
Number of extensions: 1611274
Number of successful extensions: 3420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3413
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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