Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G16
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-6|AAF60762.2|  180|Caenorhabditis elegans Hypothetical ...    56   2e-08
Z96047-10|CAH04703.1|  195|Caenorhabditis elegans Hypothetical p...    34   0.087
Z80215-19|CAH19104.1|  195|Caenorhabditis elegans Hypothetical p...    34   0.087
U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    32   0.47 
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    32   0.47 
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    32   0.47 
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    32   0.47 
Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type chlo...    28   5.7  
AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride ...    28   5.7  

>AC024810-6|AAF60762.2|  180|Caenorhabditis elegans Hypothetical
           protein Y54E10A.5 protein.
          Length = 180

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/100 (29%), Positives = 51/100 (51%)
 Frame = +3

Query: 306 KPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAPQIL 485
           +P+ IG  N+F+V  K  + Y  VG  NV    + + +   V   C +GA CT+ + Q L
Sbjct: 67  QPMIIGDWNIFQVHSKSSAKY--VGSRNVIGVHAVLEDGCSVSDDCSVGAKCTVFSHQNL 124

Query: 486 ADNTVIWGSEHHVREALEKQPSQLLQLDFLSKVMPNYHRL 605
             +  ++ + +  R       +   Q++FL K++P+YH L
Sbjct: 125 EPSVSVYAATNLSRTTKTPNMTSPHQIEFLRKILPSYHHL 164


>Z96047-10|CAH04703.1|  195|Caenorhabditis elegans Hypothetical
           protein DY3.8 protein.
          Length = 195

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 317 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 189
           K+W+WG LL+++  M+Y  +F   TV   ++R  +  N  S M
Sbjct: 89  KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130


>Z80215-19|CAH19104.1|  195|Caenorhabditis elegans Hypothetical
           protein DY3.8 protein.
          Length = 195

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 317 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 189
           K+W+WG LL+++  M+Y  +F   TV   ++R  +  N  S M
Sbjct: 89  KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130


>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 476
           H    VA +L  +  H     +FE  S  GE   + +GC +G ACT +AP
Sbjct: 243 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 289


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 476
           H    VA +L  +  H     +FE  S  GE   + +GC +G ACT +AP
Sbjct: 172 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 218


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 476
           H    VA +L  +  H     +FE  S  GE   + +GC +G ACT +AP
Sbjct: 172 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 218


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 HNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVIGAACTLTAP 476
           H    VA +L  +  H     +FE  S  GE   + +GC +G ACT +AP
Sbjct: 243 HVASVVASQLTRLV-HGSSGGIFENESRSGE--MLAAGCAVGVACTFSAP 289


>Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220


>Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251


>Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251


>Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220


>Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251


>Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251


>AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type
           chloride channel CLH-2b protein.
          Length = 880

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 230 GREMEMLSSGCAVGIACTFSAP 251


>AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 844

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 414 GEEVKV-GSGCVIGAACTLTAP 476
           G E+++  SGC +G ACT +AP
Sbjct: 199 GREMEMLSSGCAVGIACTFSAP 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,709
Number of Sequences: 27780
Number of extensions: 262140
Number of successful extensions: 814
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)