Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G13
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.078
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.73
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.3
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.7
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 2.9
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 3.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.1
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 6.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.0
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 467 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 625
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.73
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 422 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 592
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.3
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 425 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 601
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 602 PNMVKKIDLAPTVXSDAAAVPEIKTPEAADAPKLXDNPVXEDKPADISPD 751
VKK P+ E P+A AP V E +P +S D
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEPFYVSKD 548
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.7
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = +2
Query: 470 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVXSD 649
+VEE A+ S E S KPSA AE D I V I L
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 650 AAAVPEI---KTPEAADAPKLXDNPVXEDK 730
+ E+ KTP DAP E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 477 KNQLLSLKIQKLKYKLPSLKFQKKKNL 557
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +2
Query: 437 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 607
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 608 --MVKKIDL----APTVXSDAAAVPEIKTP 679
M K+ DL PT +++A+VP+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 3.9
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 497 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVXSDAAAVPEIKT 676
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 677 PEAADAPKLXDNPV-XEDKPADISPDAPKA 763
P AA AP + V + A ++P+ KA
Sbjct: 83 P-AAVAPVEATSAVDTSEAVASMTPNKRKA 111
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 361 VFWGYIVLFGLWYSGYLVVTNW 296
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 443 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 589
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 530 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVXSDAAAVPEIKTPEA 685
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 449 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 586
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 446 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 583
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 9.0
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = +2
Query: 428 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 595
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 596 IIPNMVKKIDLAPTVXSDAAAVPEIKTPEAADAPKLXDNPVXEDKPADISPD 751
+ + V + ++ +V + P++ PK +P E+K D S D
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPK---SP--EEKSDDTSND 1003
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = +2
Query: 542 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVXSDAAAVPEIKTPEAADAPKLXDNPVX 721
KE+KP+ N KK D+A + ++ +P + DA D P+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545
Query: 722 EDKPADISPDAP 757
+ K + S P
Sbjct: 546 KAKEPEESSITP 557
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 9.0
Identities = 23/81 (28%), Positives = 33/81 (40%)
Frame = -2
Query: 684 ASGVLISGTAAASLXTVGAKSIFFTMLGMMXXXXXXXXXXXALGFSSFEISATVACTSVF 505
AS IS +A S + SI + + SS S++ +SV
Sbjct: 205 ASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVV 264
Query: 504 ESSG*AAGSSTLISADFASAS 442
S+ A SST+ SA +SAS
Sbjct: 265 SSATSVAASSTISSATSSSAS 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,775
Number of Sequences: 5004
Number of extensions: 35176
Number of successful extensions: 124
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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