Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G12
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   135   3e-32
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    89   4e-18
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    85   6e-17
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    84   8e-17
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    84   8e-17
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    56   3e-08
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       56   3e-08
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       56   3e-08
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    27   9.4  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  135 bits (326), Expect = 3e-32
 Identities = 62/89 (69%), Positives = 69/89 (77%)
 Frame = +3

Query: 207 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 386
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 387 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 473
           V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76  VEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +3

Query: 210 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 386
           I   + G VKW++V   YGFI+RND ++D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 387 VAGEKGFEAAGVTGPGGEPVKGSPY 461
           V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +3

Query: 207 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 383
           V+   + G VKW++V   YGFI+R+D ++DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 384 VVAGEKGFEAAGVTGPGGEPVKGSPY 461
           +V G+ G EAA VTGP G  V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +3

Query: 207 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 374
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 375 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 464
            F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +3

Query: 207 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 374
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 375 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 464
            F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 401
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 402 GFEAAGVTGP-GGEPVKGS 455
           G EA  V+G   G+ +KGS
Sbjct: 80  GREAYAVSGEVEGQGLKGS 98


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 401
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 402 GFEAAGVTGP-GGEPVKGS 455
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 401
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 402 GFEAAGVTGP-GGEPVKGS 455
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +3

Query: 228 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 401
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 402 GFEAAGVTGP-GGEPVKGS 455
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 626 ISXQFFPSQFSRWTPW 673
           I  Q++P+QF ++TPW
Sbjct: 236 IEKQYYPAQFKQFTPW 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,210
Number of Sequences: 27780
Number of extensions: 205029
Number of successful extensions: 696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)