Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G11
(699 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and... 337 2e-91
UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and... 313 3e-84
UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa s... 203 3e-51
UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (R... 169 7e-41
UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa ... 162 6e-39
UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and... 159 5e-38
UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and... 159 8e-38
UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2; ... 147 2e-34
UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1... 147 3e-34
UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa ... 138 9e-32
UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa s... 136 5e-31
UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa s... 124 2e-27
UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2; ... 122 6e-27
UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase... 122 1e-26
UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1; ... 119 6e-26
UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain ... 116 7e-25
UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain ... 114 2e-24
UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA polym... 111 2e-23
UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep: Tcc... 103 6e-21
UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like prote... 102 7e-21
UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA polym... 102 1e-20
UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1; Bige... 94 3e-18
UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 94 3e-18
UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113, w... 86 7e-16
UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1; Arabi... 85 1e-15
UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putati... 81 2e-14
UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia intesti... 79 1e-13
UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putativ... 69 1e-10
UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain ... 68 3e-10
UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain ... 67 4e-10
UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putativ... 58 2e-07
UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia intest... 56 8e-07
UniRef50_Q2P9W1 Cluster: RNA polymerase I subunit 1RPB5; n=2; Tr... 52 1e-05
UniRef50_O27122 Cluster: DNA-directed RNA polymerase subunit H; ... 52 2e-05
UniRef50_Q976A3 Cluster: DNA-directed RNA polymerase subunit H; ... 50 4e-05
UniRef50_O28394 Cluster: DNA-directed RNA polymerase subunit H; ... 48 2e-04
UniRef50_Q5UPX7 Cluster: DNA-directed RNA polymerase subunit 5; ... 48 2e-04
UniRef50_Q12WS3 Cluster: RNA polymerase subunit, RPB5; n=1; Meth... 46 9e-04
UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella... 45 0.002
UniRef50_Q980Q9 Cluster: DNA-directed RNA polymerase subunit H; ... 44 0.003
UniRef50_Q9YAT3 Cluster: DNA-directed RNA polymerase subunit H; ... 44 0.004
UniRef50_Q8PUQ8 Cluster: DNA-directed RNA polymerase subunit H; ... 44 0.005
UniRef50_Q65224 Cluster: RNA polymerase subunit 23kDa; n=2; Afri... 43 0.006
UniRef50_A3CS81 Cluster: RNA polymerase subunit, RPB5; n=3; Meth... 43 0.006
UniRef50_P41559 Cluster: DNA-directed RNA polymerase subunit H; ... 42 0.011
UniRef50_Q4A325 Cluster: Putative DNA-directed RNA polymerase su... 42 0.019
UniRef50_A3H963 Cluster: RNA polymerase subunit, RPB5; n=1; Cald... 40 0.078
UniRef50_A5ULN9 Cluster: DNA-dependent RNA polymerase, subunit H... 39 0.10
UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H; ... 39 0.10
UniRef50_Q03588 Cluster: DNA-directed RNA polymerase subunit H; ... 39 0.14
UniRef50_Q8ZYR0 Cluster: DNA-directed RNA polymerase subunit H; ... 38 0.24
UniRef50_P61519 Cluster: DNA-directed RNA polymerase subunit H; ... 38 0.24
UniRef50_A2EGQ6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.31
UniRef50_A0RXX1 Cluster: DNA-directed RNA polymerase, subunit H,... 36 0.72
UniRef50_Q74M66 Cluster: NEQ507; n=1; Nanoarchaeum equitans|Rep:... 35 1.7
UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.2
UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q01078 Cluster: Protein PC326; n=4; Murinae|Rep: Protei... 34 2.9
UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2; ... 34 3.9
UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Re... 34 3.9
UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:... 34 3.9
UniRef50_Q0HGS2 Cluster: Sigma54 specific transcriptional regula... 33 6.7
UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in chr... 33 8.9
UniRef50_Q91F72 Cluster: 454R; n=1; Invertebrate iridescent viru... 33 8.9
UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance pro... 33 8.9
>UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=16; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Homo
sapiens (Human)
Length = 210
Score = 337 bits (828), Expect = 2e-91
Identities = 157/194 (80%), Positives = 173/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG+KRGQVV II
Sbjct: 181 RYFGIKRGQVVKII 194
>UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=32; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Caenorhabditis elegans
Length = 211
Score = 313 bits (768), Expect = 3e-84
Identities = 144/193 (74%), Positives = 168/193 (87%)
Frame = +3
Query: 120 DAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 299
D TY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 300 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 479
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 480 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVAR 659
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLARYKLK++ L RIQ DPVAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVAR 182
Query: 660 YFGLKRGQVVXII 698
YFGL+RGQVV II
Sbjct: 183 YFGLRRGQVVKII 195
>UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=2; Arabidopsis thaliana|Rep: RNA polymerase
I, II and III 24.3 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 205
Score = 203 bits (496), Expect = 3e-51
Identities = 97/186 (52%), Positives = 132/186 (70%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A +D
Sbjct: 9 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKAKRNDN 63
Query: 321 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 500
+DQ+++FFPDEAK+G+KT+K Y RM+ EN+ RAI+VVQ ++P A+ + +++ K+ LE
Sbjct: 64 SDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLE 123
Query: 501 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRG 680
F E+E+L+NI EH LVPEH VLT +EK+ LL RY +KE L RIQ DP+ARYFGLKRG
Sbjct: 124 VFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRG 183
Query: 681 QVVXII 698
QVV II
Sbjct: 184 QVVKII 189
>UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (RPB5
homologue), putative; n=11; Aconoidasida|Rep:
DNA-directed RNA polymerase, subunit (RPB5 homologue),
putative - Theileria annulata
Length = 205
Score = 169 bits (410), Expect = 7e-41
Identities = 83/187 (44%), Positives = 129/187 (68%), Gaps = 1/187 (0%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+L+R R+T ++ DRGY + E +T +FK ++ + +K RS ++++ +
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARY--EMYDK--VRSKMLLVASLRTAA 62
Query: 321 TDQMFVFFPDEAK-IGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
+++ V+F DE K G+K I+ RM++ +IHRAI+V Q ++P AK ++++ PK I+
Sbjct: 63 ENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNII 122
Query: 498 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKR 677
E F+E+ELL+NIT+HELVP+HI LT +EKQ LL +YK+KE+ + RIQ+ DPVARYFGL +
Sbjct: 123 ENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSK 182
Query: 678 GQVVXII 698
GQVV II
Sbjct: 183 GQVVKII 189
>UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 221
Score = 162 bits (394), Expect = 6e-39
Identities = 80/194 (41%), Positives = 124/194 (63%), Gaps = 9/194 (4%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPS---------EKRPARSDLI 293
+LWR+ +TV ++ DRGYL+ E++ + E+FK++ G S +K +RS++
Sbjct: 11 RLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRSNMS 70
Query: 294 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 473
H +D TD++FV+F + + ++KT+ M + R I++ MSP+AK++L
Sbjct: 71 FDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKKTLQ 130
Query: 474 DMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPV 653
+M +Y LE F ES+LL+NIT+H LVP+H V+ P+EK L+ RY+LKE L RI DPV
Sbjct: 131 EMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPV 190
Query: 654 ARYFGLKRGQVVXI 695
A+Y+GLKRGQV+ I
Sbjct: 191 AKYYGLKRGQVMKI 204
>UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=13; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 215
Score = 159 bits (387), Expect = 5e-38
Identities = 86/192 (44%), Positives = 121/192 (63%), Gaps = 6/192 (3%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+LWR +TV ++ DRGY +TQ+E++ LE FK ++ D S RP R + ++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRKMMSFQANPTEES 68
Query: 321 TDQ------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMA 482
+ ++V F DE +G+KT+KT+ +QE+N I V Q ++PSA + LV
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSI 127
Query: 483 PKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARY 662
P +E F E+ L++NIT HELVP+HI L+ DEK+ELL RY+LKE+ L RIQ DPVA Y
Sbjct: 128 PPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALY 187
Query: 663 FGLKRGQVVXII 698
GLKRG+VV II
Sbjct: 188 LGLKRGEVVKII 199
>UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=14; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Ashbya
gossypii (Yeast) (Eremothecium gossypii)
Length = 215
Score = 159 bits (385), Expect = 8e-38
Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 10/196 (5%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+LWR +TV ++ DRGY +TQ+E+D +LE FK ++ D S RP R +++ +P
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----MMSFQSNP 64
Query: 321 TDQ----------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSL 470
T++ ++V F DE +GIKT+K + + E+N I + Q G++PSA + L
Sbjct: 65 TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124
Query: 471 VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDP 650
+AP I E F E+ L++NIT HELVP+HI L+ +EK+ELL RY+LKE+ L RIQ DP
Sbjct: 125 PSVAPATI-ETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDP 183
Query: 651 VARYFGLKRGQVVXII 698
VA Y GLKRG+VV II
Sbjct: 184 VALYLGLKRGEVVKII 199
>UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 227
Score = 147 bits (357), Expect = 2e-34
Identities = 75/162 (46%), Positives = 106/162 (65%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 321 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 500
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 501 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 626
F E+ELLINI EH LVPEH VL +EK+ LL RY LKE +
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQV 170
>UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb5 - Entamoeba histolytica HM-1:IMSS
Length = 204
Score = 147 bits (356), Expect = 3e-34
Identities = 73/194 (37%), Positives = 122/194 (62%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
M++ Y+ W KTV+++ DRGY+ ++++ + TLE FKE+F K E + +L +
Sbjct: 1 MESVTHIYRAW---KTVLEMLRDRGYITSEEDHNTTLEGFKERFY-KGGEGVDHK-ELTI 55
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
V +D TD + VFF + + + Y T ++ E++ RAI+V + +S KQ +++
Sbjct: 56 KVVKENDATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MME 114
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
+ E LE EL++N+T H LVP+HI+L+P+EKQELL +Y++KE+ L R+ DP++
Sbjct: 115 QPREVKWEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPIS 174
Query: 657 RYFGLKRGQVVXII 698
+Y+G +RG VV II
Sbjct: 175 KYYGFQRGDVVKII 188
>UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa
polypeptide; n=1; Aspergillus terreus NIH2624|Rep:
DNA-directed RNA polymerases II 24 kDa polypeptide -
Aspergillus terreus (strain NIH 2624)
Length = 219
Score = 138 bits (335), Expect = 9e-32
Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Frame = +3
Query: 114 NMDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 293
++DA +LWR +TV ++ DR Q L + K + +P+E + +
Sbjct: 9 SVDADREMTRLWRTWRTVFEMLQDRPS--PQRILLTLASRAKMKIQARPTEAMQVKYTPL 66
Query: 294 VLVAHNDDPTD--QMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 464
+ P D ++V F PD + +G K ++ + + E N H I + Q +SPSA +
Sbjct: 67 TKQGQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVR 126
Query: 465 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAG 644
L+ P I E F E +LL+NIT HELVP+H++L+P+EK+ LL RY+LKE+ L RIQ
Sbjct: 127 -LLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQVS 185
Query: 645 DPVARYFGLKRGQVVXII 698
DPVARY GL+RGQVV II
Sbjct: 186 DPVARYLGLRRGQVVKII 203
>UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit-like protein; n=1; Arabidopsis thaliana|Rep: RNA
polymerase I, II and III 24.3 kDa subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 136 bits (329), Expect = 5e-31
Identities = 66/186 (35%), Positives = 117/186 (62%), Gaps = 1/186 (0%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+++++R+TV+Q+ DRGY + + +L+ E+F ++F ++ + L V +P
Sbjct: 10 RIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVN--KEALFVSANKGPNP 67
Query: 321 TDQMFVFFPDEAKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
D+++VF+P+ K+G+ IK +M+++ +HR IVVV ++ A+ ++ ++ +
Sbjct: 68 ADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTI 127
Query: 498 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKR 677
E F E+EL+ NITEH+LV ++ VL K++LL Y +++ L RI DP+ARY+GLKR
Sbjct: 128 EVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKR 187
Query: 678 GQVVXI 695
GQVV I
Sbjct: 188 GQVVKI 193
>UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=1; Guillardia theta|Rep: RNA polymerase I, II
and III 24.3 kDa subunit - Guillardia theta (Cryptomonas
phi)
Length = 214
Score = 124 bits (300), Expect = 2e-27
Identities = 64/191 (33%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Frame = +3
Query: 144 LWRIRKTVMQLCHDRGYLV--TQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDD 317
L+++R+TV+Q+ DRGY+V ++D+L+ + F+E + R L + D+
Sbjct: 10 LFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFY---MKNHAICRKSLEIKRPRWDN 66
Query: 318 PTDQMFVFF----PDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM-A 482
P +++ + F D+ IG+K+I+ +C R++ E R ++++ ++P AKQ++ + +
Sbjct: 67 PENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSSINS 126
Query: 483 PKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARY 662
++E F E+EL++NIT H LVP+H +L+ +E + LL RY +K + L +I DPVA+Y
Sbjct: 127 NNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKILKNDPVAKY 186
Query: 663 FGLKRGQVVXI 695
GL+R ++V I
Sbjct: 187 LGLQRSEIVKI 197
>UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 259
Score = 122 bits (295), Expect = 6e-27
Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 17/207 (8%)
Frame = +3
Query: 129 AXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPAR-------SD 287
A KLWR +T+ Q+ DRGY ++++E + ++E+F F D ++ SD
Sbjct: 8 AGARKLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSD 67
Query: 288 -LIVLVAHNDDPTD--------QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQA 440
++ L A PTD ++V F +E KIG+ K + + + I+V Q
Sbjct: 68 AMLKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQG 127
Query: 441 GMSPSAKQSL-VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKE 617
+S A+++L + +E F+ +LL+NIT HELVP+H++L+ EK+ LL RY+LKE
Sbjct: 128 ALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKE 187
Query: 618 NMLMRIQAGDPVARYFGLKRGQVVXII 698
L RIQ DPVARY GL+RG VV II
Sbjct: 188 TQLPRIQTKDPVARYLGLQRGNVVKII 214
>UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase
(RNA) II (DNA directed) polypeptide E, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
Polymerase (RNA) II (DNA directed) polypeptide E,
partial - Ornithorhynchus anatinus
Length = 157
Score = 122 bits (293), Expect = 1e-26
Identities = 55/66 (83%), Positives = 57/66 (86%)
Frame = +3
Query: 156 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 335
R QLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL VLVAHNDDPTDQMF
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 336 VFFPDE 353
VFFP E
Sbjct: 106 VFFPGE 111
>UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 554
Score = 119 bits (287), Expect = 6e-26
Identities = 58/162 (35%), Positives = 95/162 (58%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
M+ T +LWR+ +T+ +L DRGY V DE+ LE FK ++ P+ R+ L
Sbjct: 1 MEDDRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYA--PTGGSVDRNKLNF 58
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
H + ++FVF+ + +G+KT++ + + M+E +I R I++ M+ +A++ +
Sbjct: 59 FTEHGEHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDA 118
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 602
M + LE F E+ LL+NIT H LVP+H L P+EK+ELL R
Sbjct: 119 MRGTFHLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein, expressed; n=5; Oryza sativa|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 335
Score = 116 bits (278), Expect = 7e-25
Identities = 59/187 (31%), Positives = 116/187 (62%)
Frame = +3
Query: 135 TYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 314
+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 138 SHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----S 192
Query: 315 DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI 494
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 193 DPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFK 251
Query: 495 LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLK 674
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L R+ D VARY+G
Sbjct: 252 VDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFD 311
Query: 675 RGQVVXI 695
+G VV +
Sbjct: 312 KGTVVKV 318
>UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 202
Score = 114 bits (274), Expect = 2e-24
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 2/185 (1%)
Frame = +3
Query: 147 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTD 326
+RI T+ Q+ DRGY V L+ + ++F + + P S++ +
Sbjct: 10 FRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHNLNECYSNM---------EGE 60
Query: 327 QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG-MSPSAKQSLVDMAPK-YILE 500
++ FF ++ KTI+T M E ++RAIV+ G ++P+A ++L ++ +E
Sbjct: 61 RILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIE 120
Query: 501 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRG 680
F E++INITEHELVP+H VLT DEKQE+L RY + E L RI DPV+RY G+K G
Sbjct: 121 FFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVKPG 180
Query: 681 QVVXI 695
Q++ I
Sbjct: 181 QLLKI 185
>UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=2; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 224
Score = 111 bits (266), Expect = 2e-23
Identities = 66/195 (33%), Positives = 117/195 (60%), Gaps = 1/195 (0%)
Frame = +3
Query: 114 NMDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 293
N ++ T + + RKT+M + HDRGY V++ +L +L +F+ +FG+ P +P L
Sbjct: 20 NEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFP---KP--HTLG 74
Query: 294 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMSPSAKQSL 470
V V+ +P+ ++ V FP I + +++ +E + R I+V+Q+ M+ A++ L
Sbjct: 75 VSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKEL 134
Query: 471 VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDP 650
+ K + Q ++LL+N+T+H L P++ VLT +EKQ+LL +YK++E L + D
Sbjct: 135 ENCPFKVEIIQL--NDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHMLRTDA 192
Query: 651 VARYFGLKRGQVVXI 695
+A Y+GL++GQVV I
Sbjct: 193 IASYYGLEKGQVVKI 207
>UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep:
Tcc44h21-2.4 - Trypanosoma cruzi
Length = 219
Score = 103 bits (246), Expect = 6e-21
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 4/189 (2%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAH-NDD 317
K++R+ +TV ++ DR Y V + ++E+FK+ + D P E R + V
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTVPCERIGVS 75
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI- 494
+ VFF + + ++T+K Y T+ E N R I+VVQ ++ K+ + D+ +
Sbjct: 76 QRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133
Query: 495 --LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFG 668
++ F E +L++NIT HELVP+H L +E +E+L + L+ + L RI + DPVA Y G
Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLG 193
Query: 669 LKRGQVVXI 695
L+RG+VV I
Sbjct: 194 LERGRVVRI 202
>UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like protein;
n=2; core eudicotyledons|Rep: RNA polymerase 24kDa
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 233
Score = 102 bits (245), Expect = 7e-21
Identities = 59/186 (31%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+ + R T ++ DRGY V + EL TL +F+ FG+KP +R L + V DP
Sbjct: 38 RFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLRSDP 92
Query: 321 TDQMFVFFPDEAKIGIKTIKTYCTRMQEE-NIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
++ V F I +K+++ ++ +H I+V+Q+ M+ A+++L + +
Sbjct: 93 KKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFP--FTV 150
Query: 498 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKR 677
E F +LL+NIT+H P+ +L +EK++LL ++ L++ L +Q D RY+GLK+
Sbjct: 151 ETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKK 210
Query: 678 GQVVXI 695
QVV I
Sbjct: 211 KQVVKI 216
>UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=7; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 248
Score = 102 bits (244), Expect = 1e-20
Identities = 56/188 (29%), Positives = 108/188 (57%), Gaps = 1/188 (0%)
Frame = +3
Query: 135 TYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 314
+++ + R+TV+++ DRGY + DE+ +L+ F++ G P R L + H
Sbjct: 51 SHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHAT 105
Query: 315 DPTDQMFVFFPDEAKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 491
+P+ ++ V F + + ++ ++ E++ I++VQ ++ A +++ ++ K
Sbjct: 106 NPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK- 164
Query: 492 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGL 671
+E F ++LL+N T+H L P+H VLT +K+ LL +Y ++E L R+ D +ARY+GL
Sbjct: 165 -VEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 223
Query: 672 KRGQVVXI 695
+RGQVV +
Sbjct: 224 QRGQVVKV 231
>UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1;
Bigelowiella natans|Rep: RNA polymerase I, II and III -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 204
Score = 94.3 bits (224), Expect = 3e-18
Identities = 50/186 (26%), Positives = 101/186 (54%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
K + ++ ++ + RGY V + L+ QFK++ +K KR +S ++ H +D
Sbjct: 8 KYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEK---KRYFKS--FKIINHLNDT 62
Query: 321 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 500
+++ F+ ++ I + + + + N + I + + +S +L + +E
Sbjct: 63 NNKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIE 122
Query: 501 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRG 680
F E E+LIN +H LVP+H++L PD K+++L Y +K++ L +I+ DP+++Y+G K+G
Sbjct: 123 IFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAKKG 182
Query: 681 QVVXII 698
+ II
Sbjct: 183 NMFKII 188
>UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 212
Score = 94.3 bits (224), Expect = 3e-18
Identities = 58/180 (32%), Positives = 99/180 (55%)
Frame = +3
Query: 156 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 335
R T +++ DRGY TQ+ L L+ F E++ ++ RS L + + D P +
Sbjct: 22 RNTAIEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRP---VA 72
Query: 336 VFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLES 515
V F D+ K+G K + ++ +++N+ I+++ SP+ S++ + P++ +E FL
Sbjct: 73 VHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVE 131
Query: 516 ELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
EL+ N T+H VP H VL+ +E++ + KL L RI D +ARY+G K+G VV I
Sbjct: 132 ELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVVEI 191
>UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113,
whole genome shotgun sequence; n=3; cellular
organisms|Rep: Chromosome undetermined scaffold_113,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 224
Score = 86.2 bits (204), Expect = 7e-16
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 14/204 (6%)
Frame = +3
Query: 129 AXTYKLWRIRKTVMQLCHDRGYLVTQDEL---DQTLEQFKEQFGDKPSEKRPARSDLIVL 299
A K +++ +T+ + RGY + D+ E F+ ++ ++ P R V+
Sbjct: 12 ASIKKKYKVFQTLASMIRQRGYFEANPPILIEDEPFELFEAKYR---TDVLPQR----VV 64
Query: 300 VAHNDDPTDQMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSL-- 470
+D TD+M + F+ + + K Y + + + R I+V + Q +
Sbjct: 65 CFKKEDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQVVEK 124
Query: 471 --------VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 626
V+ Y E F E +L+ ++T+HELVP+HI+L EK+ LL +Y + +N L
Sbjct: 125 KARFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQL 184
Query: 627 MRIQAGDPVARYFGLKRGQVVXII 698
RI DP+AR+ GL G VV II
Sbjct: 185 PRILQSDPIARFLGLHHGDVVKII 208
>UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1;
Arabidopsis thaliana|Rep: RNA polymerase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 85.4 bits (202), Expect = 1e-15
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = +3
Query: 417 RAIVVVQAGMSPSAKQSLVDMA---PKYILEQFLESELLINITEHELVPEHIVLTPDEKQ 587
RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH VPEH LT +EKQ
Sbjct: 67 RAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQ 125
Query: 588 ELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ L R + + +L RI DP+ARYFGLKRG+VV I
Sbjct: 126 KFLERKRTRFVVLPRIHVTDPIARYFGLKRGEVVKI 161
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/38 (44%), Positives = 29/38 (76%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 254
+L+ +++T+MQ+ DRGYL+ E+ TLE+F E++GD
Sbjct: 10 RLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGD 47
>UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerases II,
putative - Leishmania major
Length = 239
Score = 81.4 bits (192), Expect = 2e-14
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 25/211 (11%)
Frame = +3
Query: 138 YKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK-------------------P 260
+K +RI +T ++ DR Y V Q + +L +F E++ ++ P
Sbjct: 12 HKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDALP 71
Query: 261 SEKRPARSDLIVLVAHND---DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVV 431
K+ R D + L + T + V+F + + +K E R + V
Sbjct: 72 RRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIVFV 131
Query: 432 VQAGMSPSAKQSL--VDMAPKYI-LEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 602
+ +P ++++ + + + + E F E EL +NIT HELVP+H L+ +E +++L
Sbjct: 132 TPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVLHA 191
Query: 603 YKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ L+ N L RI + DPVARY+GL+RGQVV I
Sbjct: 192 HALELNQLPRILSTDPVARYYGLRRGQVVRI 222
>UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia
intestinalis|Rep: GLP_738_3930_4619 - Giardia lamblia
ATCC 50803
Length = 229
Score = 78.6 bits (185), Expect = 1e-13
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 19/206 (9%)
Frame = +3
Query: 135 TYKLWRIRKTVMQLCHDRGYLVTQDE---------LDQTLEQFKEQFGDKPSEKRPARSD 287
T + +++R+TV+++ DRGY+V D+ L+QT + F +F P + +
Sbjct: 7 TAESFKVRRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTH 66
Query: 288 LIVLVAHNDDPTDQMFVF-FPDEAKIGIKTIKTYCTRMQEENIHRAIVVV--QAGM---S 449
+ + N + + V P K I +K + + R I V+ + G S
Sbjct: 67 KLRKSSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDS 126
Query: 450 PSAK-QSLVDMAPK---YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKE 617
P+ Q+ +D A + ++E FL + LLINIT+H LVP+H++L+ EK +L Y+ E
Sbjct: 127 PNKTIQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTE 186
Query: 618 NMLMRIQAGDPVARYFGLKRGQVVXI 695
+ I++ DP+ARY GL VV I
Sbjct: 187 GQIPIIESSDPMARYLGLLPNDVVRI 212
>UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerase II,
putative - Leishmania major
Length = 342
Score = 68.9 bits (161), Expect = 1e-10
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Frame = +3
Query: 330 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY------ 491
+ VFF K+ +K + ++ + ++ IVV + P + + +++ +
Sbjct: 196 LMVFFSGSPKLSMKEVHSFREKALKKKASSMIVVTNK-IDPGVRMDVQELSGRMDEATGA 254
Query: 492 ---ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARY 662
++ F E L N+ HE VP H+ LTP E + LA KL L R+Q DP+ +Y
Sbjct: 255 ELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQY 314
Query: 663 FGLKRGQVVXI 695
GL+RG +V I
Sbjct: 315 LGLQRGSIVHI 325
>UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb5, C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 275
Score = 67.7 bits (158), Expect = 3e-10
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = +3
Query: 489 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFG 668
Y E F +L+INIT+H+LVP+H+ L EK++L+ +YK+ + L +I + DP+ +YFG
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFG 249
Query: 669 LKRGQVVXI 695
L+ QV I
Sbjct: 250 LRTKQVFKI 258
>UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, C-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 217
Score = 66.9 bits (156), Expect = 4e-10
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Frame = +3
Query: 309 NDDPTDQMFVFFPDEAKIGIKTIKT----YCTRMQEENIHRAIVVVQAGMS---PSAKQS 467
N+ T+ + + F K+ KT K Y T + H +V + ++ K+
Sbjct: 67 NNTTTEALAIVFDFRDKLTHKTFKEDYFKYYTNADKPITHLILVHQEGSLAHIFDRIKKQ 126
Query: 468 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGD 647
L + K LE F EL NIT H VP+H VL+ +EK EL RYK+ E L +I + D
Sbjct: 127 LRLIGKK--LETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKLPQILSTD 184
Query: 648 PVARYFGLKRGQVVXI 695
PV RY+G G ++ I
Sbjct: 185 PVVRYYGADPGAIIEI 200
>UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
II, putative - Trypanosoma cruzi
Length = 282
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +3
Query: 510 ESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVV 689
E EL NI HE VP+H VL+P+E Q L + ++ + L RI DP+ Y GL RG +V
Sbjct: 204 EDELAYNIARHETVPQHEVLSPEEAQLFLQQRQISLSQLPRILKEDPMVAYLGLARGSIV 263
Query: 690 XI 695
I
Sbjct: 264 KI 265
>UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia
intestinalis|Rep: GLP_25_26771_27376 - Giardia lamblia
ATCC 50803
Length = 201
Score = 56.0 bits (129), Expect = 8e-07
Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 3/196 (1%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLV--TQDELDQTLEQFKEQFGDKPSEKRPARSDL 290
MD+ A + + R+ V+++ DRGY + + ++ + E+ D + RP L
Sbjct: 1 MDSLALDH-IARVHTVVLEMYRDRGYEMGPLEKQMGLSAEEVGRLIDDNVTNLRP----L 55
Query: 291 IVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAK-QS 467
++ T ++ P + + +E + + + V G + S + +
Sbjct: 56 WFIITKGPVATAVVYSILP-----WVDASAAIGQYVDQEAVQKCLFVYFGGPAISCRSEH 110
Query: 468 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGD 647
V + + F S+ LIN T+H LVP+H +L+ EK +LA ++ E + IQ D
Sbjct: 111 RVINDVEVDIHDF--SQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSD 168
Query: 648 PVARYFGLKRGQVVXI 695
P+ R++ K G ++ I
Sbjct: 169 PIMRWYDAKPGDLIRI 184
>UniRef50_Q2P9W1 Cluster: RNA polymerase I subunit 1RPB5; n=2;
Trypanosoma brucei|Rep: RNA polymerase I subunit 1RPB5 -
Trypanosoma brucei brucei
Length = 299
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +3
Query: 495 LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLK 674
++ F E EL NI+ H+ VP+H+ +T E + L + KL L RI DP+ Y L
Sbjct: 216 IQVFEEDELAYNISRHQSVPKHVPMTDVEVRAFLEQRKLMITQLPRILNDDPMVEYLDLP 275
Query: 675 RGQVVXI 695
RG ++ I
Sbjct: 276 RGSIIRI 282
>UniRef50_O27122 Cluster: DNA-directed RNA polymerase subunit H;
n=3; Archaea|Rep: DNA-directed RNA polymerase subunit H
- Methanobacterium thermoautotrophicum
Length = 77
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 531 ITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
I +H+LVPEH++L E + +L L +I+ DPVA+ G KRG +V II
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKII 60
>UniRef50_Q976A3 Cluster: DNA-directed RNA polymerase subunit H;
n=3; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit H - Sulfolobus tokodaii
Length = 84
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +3
Query: 513 SELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVX 692
S++ I+ ++HELVP+H VL+ +E ++L +K L I+A DP+A+ G K G ++
Sbjct: 5 SKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIK 64
Query: 693 I 695
I
Sbjct: 65 I 65
>UniRef50_O28394 Cluster: DNA-directed RNA polymerase subunit H;
n=2; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit H - Archaeoglobus fulgidus
Length = 76
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +3
Query: 531 ITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ +H LVP+H VL+ +E +ELL + + L +I+A DP+A+ G K G +V I
Sbjct: 5 LQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKI 59
>UniRef50_Q5UPX7 Cluster: DNA-directed RNA polymerase subunit 5;
n=1; Acanthamoeba polyphaga mimivirus|Rep: DNA-directed
RNA polymerase subunit 5 - Mimivirus
Length = 205
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3
Query: 504 FLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQ 683
F E E L ++ +E P +L+P E + + Y L +I DP+ RYF LK+
Sbjct: 125 FKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKKND 184
Query: 684 VVXII 698
++ II
Sbjct: 185 IIRII 189
>UniRef50_Q12WS3 Cluster: RNA polymerase subunit, RPB5; n=1;
Methanococcoides burtonii DSM 6242|Rep: RNA polymerase
subunit, RPB5 - Methanococcoides burtonii (strain DSM
6242)
Length = 78
Score = 46.0 bits (104), Expect = 9e-04
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +3
Query: 528 NITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
++ +HEL+P H ++ D+ + +L Y ++ L +++ DP+A G + G VV +I
Sbjct: 5 SLLDHELIPHHEIMDEDDLKTVLTHYNVEREQLPKLKVTDPIALEIGAEPGDVVKVI 61
>UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella
nidulans|Rep: RNA polymerase subunit - Emericella
nidulans (Aspergillus nidulans)
Length = 117
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 120 DAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK 257
DA T ++WR +TV ++ DRGY VT++E+ L++FK ++ K
Sbjct: 21 DAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVK 66
>UniRef50_Q980Q9 Cluster: DNA-directed RNA polymerase subunit H;
n=7; Archaea|Rep: DNA-directed RNA polymerase subunit H
- Sulfolobus solfataricus
Length = 84
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 540 HELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
H LVP+H VL DE ++L ++ L I+A DPVAR K G ++ II
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRII 66
>UniRef50_Q9YAT3 Cluster: DNA-directed RNA polymerase subunit H;
n=4; Archaea|Rep: DNA-directed RNA polymerase subunit H
- Aeropyrum pernix
Length = 90
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 531 ITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
I EHE VPEH +L+ +E ++L +K L +I DP+AR K G ++ I
Sbjct: 12 ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEI 66
>UniRef50_Q8PUQ8 Cluster: DNA-directed RNA polymerase subunit H;
n=5; Methanomicrobia|Rep: DNA-directed RNA polymerase
subunit H - Methanosarcina mazei (Methanosarcina frisia)
Length = 78
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +3
Query: 528 NITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
++ +HE VP+H +++ E + +L++Y +++ L +I+ DPV + G G VV I
Sbjct: 5 SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKI 60
>UniRef50_Q65224 Cluster: RNA polymerase subunit 23kDa; n=2; African
swine fever virus|Rep: RNA polymerase subunit 23kDa -
African swine fever virus (ASFV)
Length = 205
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +3
Query: 525 INITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
INI + +P+H ++T +E QE L R L+ LM+I A DP + G + G V I
Sbjct: 128 INIPKVSAIPKHKLITQEEAQEFLGREYLQPQDLMQISASDPPVVWLGGRPGDFVQI 184
>UniRef50_A3CS81 Cluster: RNA polymerase subunit, RPB5; n=3;
Methanomicrobiales|Rep: RNA polymerase subunit, RPB5 -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 83
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 525 INITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
+++ HE+VP+H ++ +E +LLA Y + L +I DP + G + G V+ I+
Sbjct: 5 LDVLNHEMVPDHQIMGEEEVADLLATYHITLEQLPKIYHDDPAVKAIGGEVGNVIRIV 62
>UniRef50_P41559 Cluster: DNA-directed RNA polymerase subunit H;
n=3; Methanococcus|Rep: DNA-directed RNA polymerase
subunit H - Methanococcus vannielii
Length = 78
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 525 INITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ ++ HE+VPEH ++ DE LL +Y +K ++ DP+ G K G +V I
Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKI 57
>UniRef50_Q4A325 Cluster: Putative DNA-directed RNA polymerase
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase subunit - Emiliania huxleyi
virus 86
Length = 214
Score = 41.5 bits (93), Expect = 0.019
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Frame = +3
Query: 336 VFFPDEAKIGIKTIKTYCTRM--QEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFL 509
++F +E K+G+K ++ ++ E++H +V V G S + ++ E
Sbjct: 76 IYFFNELKVGVKIVRDLLEKLGATPESVHLILVSVHGGTSSRPTHKMENV------EFIT 129
Query: 510 ESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVV 689
++ NIT+H LV H + ++ ++ + K + + DP+A + K G ++
Sbjct: 130 YKQISYNITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLI 189
Query: 690 XI 695
I
Sbjct: 190 EI 191
>UniRef50_A3H963 Cluster: RNA polymerase subunit, RPB5; n=1;
Caldivirga maquilingensis IC-167|Rep: RNA polymerase
subunit, RPB5 - Caldivirga maquilingensis IC-167
Length = 95
Score = 39.5 bits (88), Expect = 0.078
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +3
Query: 516 ELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
E+L + HEL+P+ V+ D + LL R L I++ DP+ R G K G ++ I
Sbjct: 17 EVLEKVLNHELMPKAEVVPKDNVKALLRRLNAAPWQLPWIRSTDPLVRSLGAKPGDIIRI 76
Query: 696 I 698
I
Sbjct: 77 I 77
>UniRef50_A5ULN9 Cluster: DNA-dependent RNA polymerase, subunit H,
RpoH; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-dependent RNA polymerase, subunit H, RpoH -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 77
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 519 LLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ INI EH LVP+H ++T E ++L L RI+ DPV + K ++ I
Sbjct: 1 MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRI 59
>UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H;
n=5; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit H - Halobacterium salinarium (Halobacterium
halobium)
Length = 75
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 522 LINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
++++++HELVPEH VL + +LA Y + L +I+ DP A + G VV I+
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIV 58
>UniRef50_Q03588 Cluster: DNA-directed RNA polymerase subunit H;
n=5; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit H - Thermoplasma acidophilum
Length = 87
Score = 38.7 bits (86), Expect = 0.14
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 528 NITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQV 686
N+ +H LVPEH ++ +E++ +L +++ L +I DP + G++
Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKI 57
>UniRef50_Q8ZYR0 Cluster: DNA-directed RNA polymerase subunit H;
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit H - Pyrobaculum aerophilum
Length = 75
Score = 37.9 bits (84), Expect = 0.24
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +3
Query: 549 VPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
V E V+ +E +ELL R KL+ L I+A DP+A+ G K G V+ I+
Sbjct: 8 VKEVTVIPREEAKELLKRMKLRPWQLPWIRASDPLAQKAGAKPGDVLKIV 57
>UniRef50_P61519 Cluster: DNA-directed RNA polymerase subunit H;
n=4; Methanococcales|Rep: DNA-directed RNA polymerase
subunit H - Methanococcus maripaludis
Length = 78
Score = 37.9 bits (84), Expect = 0.24
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 525 INITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
+ I+ HE+VP H ++ +E LL +Y +K ++ DP+ G G VV I
Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKI 57
>UniRef50_A2EGQ6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1019
Score = 37.5 bits (83), Expect = 0.31
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Frame = +3
Query: 204 QDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 383
Q +D+ + ++K Q + ++ + A + L L N T+++ + +I + ++
Sbjct: 567 QKSMDEVISKYKAQNEESINQLKSATAQLEDLRHENTQKTEEISQLKENSTEINDQ-LRE 625
Query: 384 YCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHI 563
+Q+ I R + M +A + +D + E E + T+ EL I
Sbjct: 626 AKDLIQQMKIERRELKQHVDMLETANRKSIDRLKEKSQSLRHEYEKAVQETQAELASARI 685
Query: 564 VL--TPDEKQELLARYKLKENMLMRIQA 641
L T D+ ++LLA+ + K+ L+R+QA
Sbjct: 686 ELETTMDDYRKLLAKSEEKDENLIRLQA 713
>UniRef50_A0RXX1 Cluster: DNA-directed RNA polymerase, subunit H,
RpoH/RPB5; n=2; Thermoprotei|Rep: DNA-directed RNA
polymerase, subunit H, RpoH/RPB5 - Cenarchaeum symbiosum
Length = 83
Score = 36.3 bits (80), Expect = 0.72
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 525 INITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVXI 695
I + +H VP H ++T E +E+L ++ K L I DP G+K G ++ I
Sbjct: 8 ILVPDHVYVPLHEIITKAEAEEVLEKFNCKPTELPLILVEDPAIIGLGVKPGDMIRI 64
>UniRef50_Q74M66 Cluster: NEQ507; n=1; Nanoarchaeum equitans|Rep:
NEQ507 - Nanoarchaeum equitans
Length = 91
Score = 35.1 bits (77), Expect = 1.7
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 537 EHELVPEHIVLTPDEKQELLARYKLKE-NMLMRIQAGDPVARYFGLKRGQVVXII 698
+H LVPE+ LT +E ++LL + + L +I DP ++ K G V+ II
Sbjct: 8 KHRLVPEYQKLTKEEVEKLLKELNIDSIDYLPKIYVDDPAIQHLNPKPGDVLRII 62
>UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 246
Score = 34.7 bits (76), Expect = 2.2
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 429 VVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 596
+V+ S + L+D+ I E+ LES L IN + ++ P+ +LTPDE+ L
Sbjct: 123 LVEFAESKDLMEMLLDINKDSINEKKLESYLKINDDDPDITPDRNMLTPDERSRRL 178
>UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 902
Score = 34.7 bits (76), Expect = 2.2
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +3
Query: 93 SVLSXX*NMDAAAXTYKLWRIRKTVMQLCHDRGYLVTQ----DELDQTLEQFKEQFGDKP 260
S+L M YK ++K V +L D LV + D+L + +EQ+ FGD
Sbjct: 660 SLLKISKKMKMETSEYK--DVKKAVKKLYRDHCELVKENEEKDKLLKEIEQWYRDFGDFH 717
Query: 261 SEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRM 398
EK R D+I + + ++P +M++ +E+K +T+ R+
Sbjct: 718 DEKLSIR-DMIKELDNRENPLTKMYMDVSNESKTVKETLVICAQRL 762
>UniRef50_Q01078 Cluster: Protein PC326; n=4; Murinae|Rep: Protein
PC326 - Mus musculus (Mouse)
Length = 747
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +3
Query: 462 QSLVDMAPKYILEQ--FLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRI 635
Q++ ++ +Y LE+ +E++++ ++ + + V+ +E Q RY+L+ ++
Sbjct: 170 QNVQNLFHRYELEEGEVVEAQVVQSMFPYYELEAGEVVEAEEVQGFFQRYELEAREVIGA 229
Query: 636 QAGDPVARYFGLKRGQVV 689
Q G ++R++GL+ G+VV
Sbjct: 230 QGGQGLSRHYGLEGGEVV 247
>UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2;
Ehrlichia ruminantium|Rep: Putative uncharacterized
protein - Ehrlichia ruminantium (strain Gardel)
Length = 521
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 396 MQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH--ELVPEHI-V 566
++++N+H+ I + + L+ +A KYI++ L +IT+H L P+HI V
Sbjct: 430 IKDKNLHKTIHELLGTQQQVSCHELIKLARKYIMDSCLPHMQFYSITQHTINLNPKHITV 489
Query: 567 LTPD 578
TP+
Sbjct: 490 FTPE 493
>UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Rep:
SEC14-like protein 5 - Homo sapiens (Human)
Length = 756
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 405 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 584
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 585 Q 587
+
Sbjct: 560 E 560
>UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:
Oligophrenin 1 - Homo sapiens (Human)
Length = 802
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>UniRef50_Q0HGS2 Cluster: Sigma54 specific transcriptional
regulator, Fis family; n=20; Gammaproteobacteria|Rep:
Sigma54 specific transcriptional regulator, Fis family -
Shewanella sp. (strain MR-4)
Length = 469
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 531 ITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLK 674
+ +HE+ PEH+ LTP ++E A + MR++ + +A Y L+
Sbjct: 371 LADHEITPEHLQLTPSLEKETTAEENVVIPQGMRLEELEKIAIYQALE 418
>UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in
chromosome partitioning; n=1; Nostoc punctiforme PCC
73102|Rep: COG1192: ATPases involved in chromosome
partitioning - Nostoc punctiforme PCC 73102
Length = 503
Score = 32.7 bits (71), Expect = 8.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 147 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 314
W R ++ +C D+GY + Q E D TL +++ K E+ + ++ V D
Sbjct: 443 WIPRLNIVSICQDKGYPLYQGEFDNTLVSQEKEAAQKVLERYTNLAQHLIKVTTGD 498
>UniRef50_Q91F72 Cluster: 454R; n=1; Invertebrate iridescent virus
6|Rep: 454R - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 184
Score = 32.7 bits (71), Expect = 8.9
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = +3
Query: 471 VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARY---KLKENMLMRIQA 641
++ K +E F +L +NIT++ L P L +E ++ +Y K++ + +Q+
Sbjct: 88 IEQTTKGKVEIFHNKDLQMNITKYHLQPLFNKLLDEEAKDFKKKYIKCKIENGKKIILQS 147
Query: 642 ------GDPVARYFGLKRGQVVXI 695
DP+AR+F + G V+ I
Sbjct: 148 FPSMSKSDPIARFFKYQSGDVIKI 171
>UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance
protein; n=28; Magnoliophyta|Rep: TIR-NBS-LRR type
disease resistance protein - Populus trichocarpa
(Western balsam poplar) (Populus balsamiferasubsp.
trichocarpa)
Length = 1617
Score = 32.7 bits (71), Expect = 8.9
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 183 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKI 362
DRGY V EL ++L +F+ FG+ P L ++ +P ++ V F +I
Sbjct: 4 DRGYDVADTELTRSLMEFRSIFGNCPD-----LDSLRFSISLRSNPYNKNLVIFMGTDEI 58
Query: 363 GIKTIK-TYCTRMQEENIHRAIVVVQAGMSPSAKQ 464
I+ Y + +E+ I+++Q+ M+ AK+
Sbjct: 59 RTANIRAVYGQILSKESRQGLILILQSKMNHFAKK 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,081,649
Number of Sequences: 1657284
Number of extensions: 13678795
Number of successful extensions: 36694
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 35346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36659
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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