Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G11
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub... 158 6e-40
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 2.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 3.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 4.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.9
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 158 bits (384), Expect = 6e-40
Identities = 83/187 (44%), Positives = 117/187 (62%), Gaps = 1/187 (0%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQF-GDKPSEKRPARSDLIVLVAHNDD 317
+++R KT QL HDRGY V+Q ELD TL+QFK G + R S ND
Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLS--FYAKPSNDS 67
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
+++ F E +GIK ++T+ + + N I++ M+PSA + + + ++ +
Sbjct: 68 NKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTI 127
Query: 498 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLKR 677
E F ES+L++NIT HELVP+HI+L+PDEK+ELL RYKL+E L RIQ DPVARY GLKR
Sbjct: 128 ETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKR 187
Query: 678 GQVVXII 698
G+VV I+
Sbjct: 188 GEVVKIV 194
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 396 MQEENIHRAIV--VVQAGMSP--SAKQSLVDMAPKYILEQFLE 512
+ + N+HR I+ + GM SAKQ L D+ P I+ +LE
Sbjct: 78 VDKSNLHRQIIHSTSKQGMHKAISAKQFLEDLNPNVIINTYLE 120
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 477 MAPKYILEQFLESELLINITEHE-LVPEHIVLTPDEKQELLARYKLKENMLMR-IQAGD 647
+AP Y+L + L ++ E + L P + TP+EK+E+ A Y + + + + +Q G+
Sbjct: 1285 LAPCYLLPDIIPCALSLHNAEFQGLWP---LRTPEEKEEVCAVYNISQRVCTKYVQFGN 1340
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +3
Query: 201 TQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL---------VAHNDDPTDQMFVFFPDE 353
++DELD++ + +EQ K E + S L + + N + + D+
Sbjct: 738 SKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDK 797
Query: 354 AKIGIKTIKTYCTRMQEENIH 416
K + +++ + +Q++N H
Sbjct: 798 LKADLSNLESKLSSLQQDNFH 818
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 213 LDQTLEQFKEQFGDKPSEKRPARSDLI-VLVAHNDDPTDQM 332
LD+ L++ KE D EK DL+ LV +ND+ D +
Sbjct: 914 LDRLLQKVKEHSEDNTKEKHQQLLDLLESLVGNNDNLIDSI 954
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = -2
Query: 434 YNNNSPMNILFLHSCTICLYSFYTN-FSFIRKENKHL---IRWIIIMSH*HNQITSCWSF 267
+N + + +F S C Y+ + ++F ++K + + WI+++ H + + W+
Sbjct: 982 WNVSDTLKNMFSTSDFSCAYNSVEDLYAFTSMKSKEILPEVLWIMLLVHLADLCENSWAS 1041
Query: 266 LTWFIAKLLFKLF 228
+ A++LF++F
Sbjct: 1042 VRNGAAQILFRIF 1054
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 466 DCLADGDIPACTTTIAL*IFSSCILVQYVFIVFIPILAS 350
D L + +PA + T+ +FSS + +F+VF+ ++ S
Sbjct: 586 DILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNS 624
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Frame = -2
Query: 422 SPMNILFLHSCTICLYSFYTNFSFIRKENKHLI-------RWIIIMSH--*HNQITSCWS 270
S + ILF+ C +CL F +S+ +E +I W++ + H I+ WS
Sbjct: 549 SLLKILFISLCILCLLQFIV-YSYFHREGFSVILMGLAAWPWLLHADYAFSHKTISVSWS 607
Query: 269 FLT 261
LT
Sbjct: 608 VLT 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,094
Number of Sequences: 5004
Number of extensions: 60193
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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