Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G11
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0314 - 24328019-24328144,24329027-24329062,24329780-243298... 173 1e-43
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582... 147 6e-36
11_01_0263 - 1998399-1998524,1999055-1999168,1999400-1999576,200... 117 8e-27
12_01_0261 - 1917149-1917274,1917809-1917922,1918155-1918331,191... 116 2e-26
08_02_0636 + 19567654-19568859 29 3.5
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 28 8.2
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804... 28 8.2
>04_04_0314 -
24328019-24328144,24329027-24329062,24329780-24329893,
24329997-24330176,24330313-24330510
Length = 217
Score = 173 bits (421), Expect = 1e-43
Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 13/207 (6%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
M + T +L+RIR+TVMQ+ DRGYLVT+ ++D F +FGD P D +V
Sbjct: 1 MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLV 54
Query: 297 LVAHN-DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 473
H D+ DQ++VFFP +AK G+KTI++Y RM++E++ I+VVQ +S A+ ++
Sbjct: 55 FSRHKKDNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQ 114
Query: 474 DMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLM-------- 629
+++ K+ LE F E+ELL+NI +H LVPEH +LTP++K+ LL RY +KE ++
Sbjct: 115 EVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQILSLTQLVKC 174
Query: 630 ----RIQAGDPVARYFGLKRGQVVXII 698
RIQ DP+ARY+G+KRGQVV II
Sbjct: 175 VNLPRIQITDPIARYYGMKRGQVVKII 201
>01_06_1059 -
34156139-34156238,34157113-34157189,34158146-34158259,
34158390-34158569,34159312-34159524
Length = 227
Score = 147 bits (357), Expect = 6e-36
Identities = 75/162 (46%), Positives = 106/162 (65%)
Frame = +3
Query: 141 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 320
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 321 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 500
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 501 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 626
F E+ELLINI EH LVPEH VL +EK+ LL RY LKE +
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQV 170
>11_01_0263 -
1998399-1998524,1999055-1999168,1999400-1999576,
2000321-2000587
Length = 227
Score = 117 bits (282), Expect = 8e-27
Identities = 60/188 (31%), Positives = 117/188 (62%)
Frame = +3
Query: 135 TYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 314
+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 30 SHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----S 84
Query: 315 DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI 494
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 85 DPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFK 143
Query: 495 LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLK 674
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L R+ D VARY+G
Sbjct: 144 VDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFD 203
Query: 675 RGQVVXII 698
+G VV +I
Sbjct: 204 KGTVVKVI 211
>12_01_0261 -
1917149-1917274,1917809-1917922,1918155-1918331,
1919075-1919341
Length = 227
Score = 116 bits (278), Expect = 2e-26
Identities = 59/187 (31%), Positives = 116/187 (62%)
Frame = +3
Query: 135 TYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 314
+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 30 SHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----S 84
Query: 315 DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI 494
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 85 DPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFK 143
Query: 495 LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFGLK 674
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L R+ D VARY+G
Sbjct: 144 VDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFD 203
Query: 675 RGQVVXI 695
+G VV +
Sbjct: 204 KGTVVKV 210
>08_02_0636 + 19567654-19568859
Length = 401
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = -1
Query: 345 ERKQTSDPLDHHYEPLTQSNHFLLVFSHLVYRQTAL*IVLKFGPIHLA*LNILGHGTTAL 166
+ ++ D + + EP T S + SH++Y TA ++ F P + + GT +
Sbjct: 65 DSQKVFDEMPSNKEPTTASV-LHVTMSHVLYPVTAEVLLQVFSPYGAEEVRVYNQGTIQV 123
Query: 165 QFYVYARVCK 136
+ ++ R+C+
Sbjct: 124 EAFILFRLCQ 133
>06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 683 LSSFKSKVS---RHRVTCLYSHQHVLFQLISCQEFLLFIRC 570
LSS +K+S H+V Q++ QL+S E L+F++C
Sbjct: 1280 LSSSLTKLSLSMNHKVERFTKEQNMALQLLSSLEVLIFVQC 1320
>06_03_0288 -
19179619-19179714,19180209-19180300,19180408-19180494,
19180802-19180963,19181032-19181183,19181526-19181872
Length = 311
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 198 LNILGHGTTALQFYVYARVCKXLRQHPCFXXDLKL 94
L+ LGHG Y+ + K L +HP F D KL
Sbjct: 117 LHTLGHGGPRAAEYLKKHLFKNLVKHPKFLKDTKL 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,820
Number of Sequences: 37544
Number of extensions: 369035
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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