Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G11
(699 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein. 341 2e-93
J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD su... 340 3e-93
BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DN... 340 3e-93
BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DN... 340 3e-93
AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein. 337 2e-92
S42643-1|AAB19339.1| 48|Homo sapiens RNA polymerase II protein. 60 1e-08
Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein. 34 0.56
AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.56
AB007880-1|BAA24850.2| 756|Homo sapiens KIAA0420 protein. 34 0.56
BC106878-1|AAI06879.1| 755|Homo sapiens STRN protein protein. 31 5.2
AJ223814-1|CAA11560.1| 780|Homo sapiens striatin protein. 31 5.2
AC007382-1|AAF66162.1| 616|Homo sapiens unknown protein. 31 5.2
>D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein.
Length = 210
Score = 341 bits (837), Expect = 2e-93
Identities = 158/194 (81%), Positives = 174/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFLE ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLEQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG++RGQVV II
Sbjct: 181 RYFGIRRGQVVKII 194
>J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD
subunit protein.
Length = 210
Score = 340 bits (836), Expect = 3e-93
Identities = 158/194 (81%), Positives = 174/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG+KRGQVV II
Sbjct: 181 RYFGIKRGQVVKII 194
>BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 340 bits (836), Expect = 3e-93
Identities = 158/194 (81%), Positives = 174/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG+KRGQVV II
Sbjct: 181 RYFGIKRGQVVKII 194
>BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 340 bits (835), Expect = 3e-93
Identities = 158/194 (81%), Positives = 174/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG+KRGQVV II
Sbjct: 181 RYFGVKRGQVVKII 194
>AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein.
Length = 210
Score = 337 bits (828), Expect = 2e-92
Identities = 157/194 (80%), Positives = 173/194 (89%)
Frame = +3
Query: 117 MDAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 296
MD TY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 297 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 476
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 477 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVA 656
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L RIQAGDPVA
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 657 RYFGLKRGQVVXII 698
RYFG+KRGQVV II
Sbjct: 181 RYFGIKRGQVVKII 194
>S42643-1|AAB19339.1| 48|Homo sapiens RNA polymerase II protein.
Length = 48
Score = 59.7 bits (138), Expect = 1e-08
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 603 YKLKENMLMRIQAGDPVARYFGLKRGQVVXII 698
YKL+EN L RIQAGDPVARYFG+KRGQVV II
Sbjct: 1 YKLRENQLPRIQAGDPVARYFGIKRGQVVKII 32
>Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.56
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 318 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 497
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 498 EQFLES 515
+ ES
Sbjct: 323 RRKTES 328
>AB007880-1|BAA24850.2| 756|Homo sapiens KIAA0420 protein.
Length = 756
Score = 33.9 bits (74), Expect = 0.56
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 405 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 584
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 585 Q 587
+
Sbjct: 560 E 560
>BC106878-1|AAI06879.1| 755|Homo sapiens STRN protein protein.
Length = 755
Score = 30.7 bits (66), Expect = 5.2
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +3
Query: 198 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 377
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 299 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 353
Query: 378 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 521
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 354 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 396
>AJ223814-1|CAA11560.1| 780|Homo sapiens striatin protein.
Length = 780
Score = 30.7 bits (66), Expect = 5.2
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +3
Query: 198 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 377
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 324 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 378
Query: 378 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 521
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 379 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 421
>AC007382-1|AAF66162.1| 616|Homo sapiens unknown protein.
Length = 616
Score = 30.7 bits (66), Expect = 5.2
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +3
Query: 198 VTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTI 377
V Q + + EQ+K++ K KRP RS L ++A+ D D++ P +G +
Sbjct: 160 VDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRD-VDELPSLQP---SVGSPS- 214
Query: 378 KTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 521
+ +R+ E I+RA V PS+ +S + A ++ LESEL
Sbjct: 215 RPSSSRLPEHEINRADEVEALTFPPSSGKSFIMGA-----DEALESEL 257
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,763,491
Number of Sequences: 237096
Number of extensions: 2000584
Number of successful extensions: 4428
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4428
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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