Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G11
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical ... 313 9e-86
AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical ... 30 1.8
AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical ... 30 1.8
AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical ... 30 1.8
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 28 7.4
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 28 7.4
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 28 7.4
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 9.8
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 9.8
U58753-4|AAC24435.2| 312|Caenorhabditis elegans Hypothetical pr... 27 9.8
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 27 9.8
>AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical
protein H27M09.2 protein.
Length = 211
Score = 313 bits (768), Expect = 9e-86
Identities = 144/193 (74%), Positives = 168/193 (87%)
Frame = +3
Query: 120 DAAAXTYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 299
D TY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 300 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 479
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 480 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVAR 659
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLARYKLK++ L RIQ DPVAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVAR 182
Query: 660 YFGLKRGQVVXII 698
YFGL+RGQVV II
Sbjct: 183 YFGLRRGQVVKII 195
>AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical
protein F32B5.6d protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 402 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 572
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218
Query: 573 PDEKQELLARYKLKENM 623
E Q++ + EN+
Sbjct: 219 THELQQMAHEIRENENI 235
>AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical
protein F32B5.6b protein.
Length = 400
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 402 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 572
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 573 PDEKQELLARYKLKENM 623
E Q++ + EN+
Sbjct: 350 THELQQMAHEIRENENI 366
>AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical
protein F32B5.6a protein.
Length = 432
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 402 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 572
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 573 PDEKQELLARYKLKENM 623
E Q++ + EN+
Sbjct: 350 THELQQMAHEIRENENI 366
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 390 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 569
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 496 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 555
Query: 570 TPDEKQE--LLARYKL 611
TP+ K E LLA K+
Sbjct: 556 TPNPKNENPLLAMQKM 571
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 390 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 569
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 467 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 526
Query: 570 TPDEKQE--LLARYKL 611
TP+ K E LLA K+
Sbjct: 527 TPNPKNENPLLAMQKM 542
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 390 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 569
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 496 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 555
Query: 570 TPDEKQE--LLARYKL 611
TP+ K E LLA K+
Sbjct: 556 TPNPKNENPLLAMQKM 571
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 498 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLM 629
+Q +E I +T E I LTP+EKQEL K+ E + M
Sbjct: 984 QQTIEETKTIELTSLEQT--QITLTPEEKQELQILKKIVEEIQM 1025
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 237 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 407
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 408 NI 413
I
Sbjct: 524 MI 525
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 216 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 383
D E +E+ +K L V +D T F +FP +KIG+ IK+
Sbjct: 23 DDVFEDDEEEVTKGSDDKEEFVPSLFVAPKLSDKSTPNFFDYFPVGSKIGLTWIKS 78
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 484 GAISTSDCLADGDIPACTTTIAL*IFSSCILVQYVFIV--FIP--ILASSGKKTNI 329
GAI+ C G +P + T+ + +SC+L + V IV F+P A + TN+
Sbjct: 912 GAIAKFSCKRPGFVPFPSDTLQCTLGASCVLSEDVGIVSGFVPDGAFADNSDSTNL 967
>U58753-4|AAC24435.2| 312|Caenorhabditis elegans Hypothetical
protein W03B1.7 protein.
Length = 312
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 446 HSRLYNNNSPMNILFLHSCTICLYSFYTNFSFIRKENKHLIRWIIIMSH 300
+SR + P+ +L + ICLY F+ + + I K ++ ++ MS+
Sbjct: 41 YSRRFKRILPLYLLIILISMICLYKFFPD-TAIESNQKSAVQALLFMSN 88
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 237 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 407
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 408 NI 413
I
Sbjct: 524 MI 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,637
Number of Sequences: 27780
Number of extensions: 344650
Number of successful extensions: 977
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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