Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G09
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.75 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.98 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 342 PDKTSPNVWSTLAKKSKEQMIT 407
           P+KT P++ STL K SK+ + +
Sbjct: 671 PNKTLPSLPSTLTKNSKQGLFS 692


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 54   GEKKRKXFLY*TVYFLSNHTL 116
            GE+K + F Y  V F+SNH +
Sbjct: 1027 GEEKSRLFHYSVVPFVSNHDI 1047



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 350  NVSKRMEYISKEIKRTDDHIC 412
            NV+K       ++K TDD IC
Sbjct: 1682 NVNKHCTIHRTQVKETDDKIC 1702


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 388 DFFANVLHTFGDVLSGFFQIL 326
           DF A  +HT G+ L   F ++
Sbjct: 326 DFIAAGIHTLGNTLVFLFDLI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,135
Number of Sequences: 438
Number of extensions: 1778
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)