Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G07
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.5  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   4.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   4.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.4  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 53  TSYGIKFRTPPVFFCKMSNKITSDSDEEKKPVLIKNATDLQRLKLEK 193
           TSY  +    P  F    + I     ++K  V+    TDLQR++LEK
Sbjct: 130 TSYQSQPNPEPADFADAPDAIGKTRTKDKYRVVY---TDLQRIELEK 173


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 596 QDCDGTDKQKNEDIGSSKFEHNSRNKSENIEQKSSEDI 709
           +D    DK+K + I     E    NK++ I  ++++DI
Sbjct: 256 EDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDI 293


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 629 HSSAYQFHHNP 597
           HSS +Q HH+P
Sbjct: 101 HSSIHQHHHDP 111



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 RKEYARQRFIQEKSEKEKLDEEYHKK 418
           +KE    + I E++ +E+ ++E HK+
Sbjct: 62  KKELRAVKEINEQARREREEQERHKQ 87


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 629 HSSAYQFHHNP 597
           HSS +Q HH+P
Sbjct: 252 HSSIHQHHHDP 262



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 RKEYARQRFIQEKSEKEKLDEEYHKK 418
           +KE    + I E++ +E+ ++E HK+
Sbjct: 213 KKELRAVKEINEQARREREEQERHKQ 238


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 629 HSSAYQFHHNP 597
           HSS +Q HH+P
Sbjct: 311 HSSIHQHHHDP 321



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 RKEYARQRFIQEKSEKEKLDEEYHKK 418
           +KE    + I E++ +E+ ++E HK+
Sbjct: 272 KKELRAVKEINEQARREREEQERHKQ 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,744
Number of Sequences: 336
Number of extensions: 2265
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)