Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G07
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0024 + 438288-438542,439020-439069,440096-440351                 37   0.019
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     30   2.2  
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493...    28   8.8  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    28   8.8  
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162           28   8.8  

>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 272 VRNVMGSSAGAGSGEFHVYRHLRRKEYARQRFIQEKSEKEKL---DEEYHKK 418
           V N  GSSAG+GSG+FH   HL    Y     +  + E+++L   D +Y K+
Sbjct: 68  VSNTSGSSAGSGSGDFH-QPHLLMGAYNFHELVGSRREQDRLARMDADYQKR 118


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 308 SGEFHVYRHLRRKEYARQRFIQEKSEKEKLDEEYH 412
           SG   V RHLRR+E   +R  + +  KEKL   +H
Sbjct: 533 SGASRVSRHLRRQERLERRVERMRRFKEKLGTVFH 567


>06_03_0056 -
           16046535-16047309,16047625-16048784,16049233-16049340,
           16049487-16049672,16050342-16050398
          Length = 761

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 68  KFRTPPVFFCKMSNKITSDSDEEKKPVLIKNATDLQRLKLEK 193
           +F TPP F C +S K+  D      PV+I +    +R  +EK
Sbjct: 267 RFSTPPEFCCPLSMKLMYD------PVIIASGQTYERENIEK 302


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 EFHVYRHLRRKEYARQRFIQE-KSEKEKLDEEYHKKIE 424
           E H+   L      R+  +QE ++ KEKLD+EYH+  E
Sbjct: 536 EKHLEESLGPLSKERESLLQEHEALKEKLDQEYHQLAE 573


>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
          Length = 692

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 GSSAGAGSGEFHVYRHLRRKEYARQRFIQEKSEKEKLDE 403
           G+SA  G G     R  RR E+ R  F+QE  ++ ++++
Sbjct: 343 GTSASGGGGGAAAKRGGRRDEHGRLVFVQESRKRFEIED 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,133
Number of Sequences: 37544
Number of extensions: 200436
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)