Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G04
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   3.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.8  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   4.8  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   8.5  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 302 NAGSSYGTWLFSSPTYGD 249
           N G+S GT LFSS T+G+
Sbjct: 19  NTGTSAGTGLFSSNTFGN 36


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 403 NAAFKTYDFISSSLETPEPHQ 465
           N   K YDF+S SL+ P  H+
Sbjct: 434 NPGDKIYDFLSKSLQRPVAHE 454


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 308 EGNAGSSYGTWLFSS--PTYGDIPFSSSSYIAAVVALXFHTPLAIV*YTAD---PSNADX 144
           EG   S  G +L +   P Y  I   +S  I A+V L  HT + I+ Y  +   P  +D 
Sbjct: 307 EGQDMSVIGNFLENHDLPRYTSITNDTSQDIGAIVFLLLHTGIPIIYYGEEQRLPGGSDT 366

Query: 143 TPN 135
             N
Sbjct: 367 PEN 369


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 371 DF*SNCLPILVMQLSRHTTLFHHLWKLQNHIK 466
           DF  + +  L++QL   T   HH W L   +K
Sbjct: 169 DFLQSEVKTLMLQLLAATAFMHHHWYLHRDLK 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,097
Number of Sequences: 5004
Number of extensions: 46983
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)