Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G04
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    29   2.8  
12_02_0313 + 17404002-17406410                                         27   8.7  
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284...    27   8.7  

>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 431 IKSYVLKAALLVWVGNSTKNLNVALTPQFQ*YLNKYDILSLEG 303
           + SY L+ +  +W       +N+ L P    Y NK ++L L G
Sbjct: 509 LSSYQLEVSQFMWEEGPRVKMNLKLFPNNTAYFNKSEVLRLRG 551


>12_02_0313 + 17404002-17406410
          Length = 802

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 247 MSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCGVKATFRFLVEL 387
           ++    ELK+  PYE+P LP ++    +F  Y   G KA  R L+++
Sbjct: 304 LTKIASELKTLEPYEVPKLP-HEECRKIFVRYAFRGEKAKDRELLKI 349


>01_06_1356 +
           36627590-36627676,36627869-36628020,36628224-36628471,
           36628585-36628707,36628797-36629842
          Length = 551

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 205 SATTAAIYDE-LEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWN 348
           S T A  +D+    G+  Y G + +  P  +P+LP +D +    ++YW+
Sbjct: 288 SKTVAVPFDQSTATGIVKYKG-VPNYAPAAMPSLPPHDDVVTAGRFYWS 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,382
Number of Sequences: 37544
Number of extensions: 272600
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)