Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G03
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.30
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 29 0.91
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 28 1.6
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 2.1
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.1
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 27 2.1
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 2.8
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 3.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.4
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 305 GGPFSA-LTPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDG 451
G P S ++P+ +P A+ A SEG + D D++G IE EDG
Sbjct: 295 GTPVSEEVSPTRLPSPTSARRASHLSEGKWDEIDDEDDDDWGSTIEFEDG 344
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 452 PEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQ 631
P SSN N + ++ + W Y K+ + L ++ QK+V+ G+P++LR
Sbjct: 172 PIASSN---TNGLINENNSK-SWIQYLKK---NGANFNLIQTPNFQKLVQSGIPNNLRAD 224
Query: 632 VWMHLCGA 655
+W G+
Sbjct: 225 IWETCSGS 232
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/62 (24%), Positives = 22/62 (35%)
Frame = +2
Query: 197 EDHERKISAALNDDDPEDVIDAIRGLNIADELLPAPGGPFSALTPSMVPQDIMAKLAQPE 376
E+ E D+P++ G+ P P P S LT Q M +P
Sbjct: 13 EEKENSFFDVTFQDEPDETTSTATGIAKVSIPTPKPSTPLSTLTNGSTIQQSMTNQPEPT 72
Query: 377 SE 382
S+
Sbjct: 73 SQ 74
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 581 KLQKMVKDGVPHSLRPQVWMHLCGA 655
K +++VK+GVP + +VW+ GA
Sbjct: 496 KFRELVKNGVPLCYKAKVWLECSGA 520
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 206 ERKISAALNDDDPEDVIDAIRG-LNIADELLPAPGGPFSALTPSMVPQDIMAKLAQP 373
ERK S L+ ++P D ++ LN A L+ P PFS +P+ PQ + K P
Sbjct: 211 ERKKSK-LSSNNPSDNNTTMKSSLNQALTLINLPEQPFSISSPTATPQLGVVKRTSP 266
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 443 EDGPEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGS 559
E+ EQ N+++A VE DQ++ E E+NF + S
Sbjct: 174 EESTEQVKNRMIALKDVEADQYQQLTELIVYELNFFKES 212
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 527 YSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQVWMHLCG-ANKKRASTEITYHEIVR 703
+ E+ + S +L + + M++D S P+VW CG N K + I E+
Sbjct: 282 FENELQAEQTSVRLVAIETVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVAS 341
Query: 704 ASSDDGLVT 730
+ + L T
Sbjct: 342 NALQNSLAT 350
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 500 DQHRLQWEFYSKE--INFTEGSGKL--EKSDKLQKMVKDGVPHSLRPQVWMHLCG 652
++ +W+ + +E I++ S + +S K Q+ ++ G+P R W + G
Sbjct: 261 ERREQRWKLFLQENGIDYIHQSPSIFPSRSAKTQRFIRKGIPPEYRGNAWFYYSG 315
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 236 DDPEDVIDAIRGLNIADELLPAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLPDYSF 415
DDP+ D I+ N + + G L V Q + PE +G GG+ D F
Sbjct: 292 DDPDSSFDIIKNNNGTFTFVESSSGEIQTLH---VSQYGALWITSPEYDGETGGMDDVGF 348
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 568 KLTTAFGKVNFFAVKLPLQSMLIIF---NKCI 482
K+TTAFG +F ++ L S +++F +KC+
Sbjct: 273 KITTAFGNCSFDEIERKLLSFVMLFENTDKCL 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,281
Number of Sequences: 5004
Number of extensions: 49586
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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