Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G03
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 46 4e-05
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 33 0.24
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 32 0.54
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 31 0.72
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 30 1.7
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 30 2.2
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 2.9
07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334 29 3.8
01_07_0293 - 42567564-42567751,42567905-42567994,42569028-425691... 29 5.1
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 28 6.7
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 28 6.7
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 6.7
09_04_0460 - 17779111-17780184 28 6.7
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 28 8.8
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 28 8.8
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/43 (44%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +2
Query: 584 LQKMVKDGVPHSLRPQVWMHLCGANKKRASTEITYH-EIVRAS 709
L+++++ GVP LRP+VW+ + GA KKR++ TY+ E++RA+
Sbjct: 102 LRRLIRKGVPPVLRPKVWLSVSGAAKKRSTVPETYYDELIRAT 144
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +2
Query: 446 DGPEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLR 625
D E+SSN VE Q R Q + S + G ++L+ +V+ GVP +LR
Sbjct: 283 DPAEESSNP----DKVEQAQDREQGDSASAALEGGNGESYFPWREELESLVRGGVPMALR 338
Query: 626 PQVWMHLCGANKKR 667
++W G ++
Sbjct: 339 GEMWQAFVGVGARK 352
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 578 DKLQKMVKDGVPHSLRPQVWMHLCGANKKRASTEITYHEIVRASSDD 718
++L+ +V+DG+P +LR ++W G +R Y+E + A+ D+
Sbjct: 197 EELECLVRDGLPMALRGELWQAFVGIGARRVK---GYYESLLAADDE 240
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 263 IRGLNIADELLPAPGGPFSALTPSMVPQDIMAKLAQPESE-GHGGGLPDYSFDEF 424
++GL + + A PF+A P P+ + L PE + G G D FDEF
Sbjct: 162 MKGLKLPQFMDAAKMAPFAAAAPIKDPKSVKFNLPPPEDDFGDDGSEFDDEFDEF 216
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 230 NDDDP--EDVIDAIRGLNIADELLPAPGGPFSALTPSMVPQD 349
ND DP ED+++ I + +PA GG TP+M P++
Sbjct: 233 NDVDPMQEDLLNEIYNKEADEPQIPAVGGTAEETTPAMAPKE 274
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 296 PAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDGP 454
P P GPF++ S P A QP S+G G P S FG GP
Sbjct: 96 PPPQGPFTSAPSSQGP---FAAAPQPPSQGPFGTAPPPSQGPFGTAPPPSQGP 145
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 263 IRGLNIADELLPAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEF 424
++GL + + A PF+A P P+ + L + G G D FDEF
Sbjct: 161 MKGLKLPQFMDAAKMAPFAAAAPIKDPKSVKFNLPPEDDFGDDGSEFDDEFDEF 214
>07_01_1011 + 8571297-8571517,8571943-8572148,8572219-8572334
Length = 180
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = +2
Query: 296 PAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKL 475
P P S P + QP G GGG F FG + +DG E+ + L
Sbjct: 55 PCPRSTESTAAVGFDPWRNSGPVTQPVGRG-GGGNGQRWFHNFGTTVAGDDGVEEEAT-L 112
Query: 476 LANAFVEDDQHRLQWEFYSKEINFTEGS 559
+A + E HR + + K++N +GS
Sbjct: 113 VAMLYKELWWHRERSKPVVKDVNM-QGS 139
>01_07_0293 -
42567564-42567751,42567905-42567994,42569028-42569195,
42569284-42569562,42569673-42569739
Length = 263
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = +2
Query: 230 NDDDPEDVIDAIRGLNIADELLPAPGG--PFSALTPSMVPQDIMAKLAQPESEGHGGGLP 403
N +D ED +AI DE L + ++PS + I + P+ G G L
Sbjct: 16 NKEDEEDDWEAIADRGENDETLTLARSLEQQAKVSPSSSSEKISTPSSGPKRRGRGSFLY 75
Query: 404 DYSFDEFGFCIEEEDGPEQSSN-KLLANAFVEDDQHR 511
D S C E D EQ SN + + V++ +H+
Sbjct: 76 DKSVLYSDQCGLENDMDEQESNDQSGSKGRVDEQKHK 112
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 371 PESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKLLANAFV 493
PE++ HG G E+ DGP ++S LL +F+
Sbjct: 644 PEAQAHGTASSPVQKASAGKANEKNDGPHKNSRTLLKKSFM 684
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 140 MDLAKSLFSSRD---HVGYVGREDHERKISAALNDDDPEDV--IDAIRGLNIADELLPA 301
M L K SS H GR + + ++ DPE+V +DA R L I +ELLP+
Sbjct: 42 MSLKKKAMSSSQKLRHSMKKGRRSSKVMSISIADERDPEEVQAVDAFRQLLILEELLPS 100
>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 6.7
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = +2
Query: 179 VGYVGREDHERKISAALNDDDPEDVIDAIRGLNIADELLPAPGGPFSALTPSMVPQDIMA 358
+G R+D + + + DPED ++ I G + L+PA G F +L S P +
Sbjct: 902 LGSYDRQDGDDEFLEINDFFDPED-LEQILGSTRSQNLIPADDGVFDSLQYSDAPMFL-- 958
Query: 359 KLAQPESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKLLAN 484
P S G + + + EFG + G Q + +LLA+
Sbjct: 959 ----PGSFDRTGVVAENHYVEFGASGIQNQG-FQHTTELLAH 995
>09_04_0460 - 17779111-17780184
Length = 357
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 326 TPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDGPEQS 463
+P +VP D+ A + E+EG G FDE D E S
Sbjct: 200 SPVVVPSDLPATATEGEAEGGGQAEEHQVFDEISLSESRADVSEDS 245
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 293 LPAPGGPFSALTPSMVPQDIMAKLAQPESEGHGG 394
+PAP G L PSM PQ + A + E +G G
Sbjct: 357 IPAPPGAERTLYPSMDPQRMGALVKSQEGDGKPG 390
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 296 PAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLP 403
P PGG A P + D+ A+ G G GLP
Sbjct: 75 PTPGGSVKA-APQFIGDDVSAQPPYHNGAGEGSGLP 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,283
Number of Sequences: 37544
Number of extensions: 311197
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -