Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_G02
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    30   2.2  
06_03_1326 - 29355467-29355817                                         29   2.9  
07_03_0366 + 17321948-17322331                                         29   5.2  
01_01_0235 - 1964981-1964997,1965545-1966325                           29   5.2  
01_01_0073 + 555485-556315                                             28   6.8  
10_08_0240 - 16106963-16107538                                         28   9.0  

>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 729 GGSDGRVAQSRGSRVAYGGGSTVFH 655
           GG  G+ A + G R+ Y GG   FH
Sbjct: 218 GGEPGKAAAAPGGRIGYSGGGQGFH 242


>06_03_1326 - 29355467-29355817
          Length = 116

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 729 GGSDGRVAQSRGSRVAYGGGSTVFHSGCNGGVAQSRG 619
           GG  G      G    YGGG +  H+G  GG  +S G
Sbjct: 39  GGGGGGKGGGEGGSGKYGGGYSGGHAGGGGGAGKSGG 75


>07_03_0366 + 17321948-17322331
          Length = 127

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 732 HGGSDGRVAQSRGSRVAYGGGSTVFHSGCNGGVAQSRGSR 613
           HGG   R  Q RG R   GGG+     G  GGV +   +R
Sbjct: 43  HGGGGRRRRQRRGRRRGSGGGAMEAEGG--GGVTEPSATR 80


>01_01_0235 - 1964981-1964997,1965545-1966325
          Length = 265

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 705 QSRGSRVAYGGGSTVFHSGCNGGVAQSRGSRV 610
           QS  S      G   F   CNGGVA  RGS++
Sbjct: 51  QSSPSSALASCGHPAFEVWCNGGVASLRGSQI 82


>01_01_0073 + 555485-556315
          Length = 276

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 726 GSDGRVAQSRGSRVAYGGGSTVFHSGCNGGV-AQSRGSRVA 607
           G  G VA    +    GGG     SGC GGV A+ RG   A
Sbjct: 190 GGGGTVAGGGTATGGAGGGEGGGESGCGGGVAAEGRGGDAA 230


>10_08_0240 - 16106963-16107538
          Length = 191

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 732 HGGSDGRVAQSRGSRVAYGGGSTVFHSGCNGGVAQSRG 619
           +G   G    S+     YGG S+   +G  GG  Q+ G
Sbjct: 91  YGSGSGSSQTSQNGYYGYGGSSSAGGAGAGGGAGQAGG 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,137
Number of Sequences: 37544
Number of extensions: 114309
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)