Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_G01
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0750 - 6754126-6755248,6755331-6755791 31 1.2
06_01_0760 - 5676973-5677830 25 2.1
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 30 2.1
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 30 2.1
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 2.8
02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443 29 2.8
09_02_0626 + 11352690-11353078,11353106-11354006 29 3.7
09_02_0495 + 9880714-9881196 29 3.7
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 3.7
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 3.7
01_06_1341 - 36434098-36436080 29 3.7
09_04_0751 + 19927164-19927835,19927926-19928663 29 4.9
09_06_0264 - 21929086-21931368 28 6.4
09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880 28 6.4
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 28 6.4
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112 28 6.4
10_08_0216 - 15942379-15942852,15942956-15943033 28 8.5
06_01_0127 - 977667-978719,978875-979051 28 8.5
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 28 8.5
>12_01_0750 - 6754126-6755248,6755331-6755791
Length = 527
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 462 PVRSLEWG*RSGSLVAEGNRLRFLVAVR-SW-YRQGSGGDDQVCTPGPLKAP 313
P L W S A G R F+VA R +W +R+G GD C G L P
Sbjct: 212 PREFLRWLTSQPSWAALGGRDHFMVAARTTWMFRRGGAGDSLGCGNGFLSRP 263
>06_01_0760 - 5676973-5677830
Length = 285
Score = 25.0 bits (52), Expect(2) = 2.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 192 GSGDSNRGGLVMSRYYNPYYNPRAVGGGMA 281
GSG + G + Y PYY P G A
Sbjct: 171 GSGSGSGSGYGQAGGYGPYYGPYGGSGAYA 200
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 141 QAYPYNPYYGNVDSLSYGSGDSNRGG 218
QA Y PY GN + G G GG
Sbjct: 140 QAGGYGPYGGNAYAQGGGQGGGGGGG 165
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 268 AVVWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPL 447
AV PR + SP P R R + + RP P P + ++L+ R+R +P
Sbjct: 7 AVPKPRFVSPSPSPAVAATRRRLRFPLAPPRPRPPPLRWSPPSPFRLSLTLSRSRRHSPP 66
Query: 448 KRP 456
P
Sbjct: 67 PPP 69
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 293 PPARSRTGAFNGPGVHT*SSPPDPCRYQLRTATRKRSLLPSATREPDLQPHS 448
PP R PG+ T P TAT KR+ P++T P PH+
Sbjct: 43 PPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHA 94
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +3
Query: 282 AFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATEL 461
+ + R E A P T Y P +Y PQ + E Y P QP+ + P +
Sbjct: 209 SLLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPPQPQVQP 267
Query: 462 ADPTEKIELY 491
P + + Y
Sbjct: 268 YPPKPQGQPY 277
>02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443
Length = 522
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 90 IMKVMYAFVMMSCA-LLVQAYPYNPYYGNVD--SLSYGSGDSNRGGL 221
+MK M F+ + + L+V AYP+ Y GN D SL Y N G L
Sbjct: 209 VMKPMLDFLAQTGSYLMVNAYPFFAYSGNADVISLDYALFRPNAGVL 255
>09_02_0626 + 11352690-11353078,11353106-11354006
Length = 429
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -1
Query: 495 WSTIRSFQWGQPVRSLEWG*RSGSLVA---EGNRLRFLVAVRSWYRQGSGGDD 346
W T+ F G R+ E + + + EG+ RF+ + S GSGGDD
Sbjct: 373 WRTLEDFPPGTEARAREQVREAANAIVSGFEGSAPRFISGLASDEESGSGGDD 425
>09_02_0495 + 9880714-9881196
Length = 160
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 138 VQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNP 245
V +YP P G+ S S G GD GGL Y P
Sbjct: 47 VNSYPPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPP 82
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = +3
Query: 213 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQ 392
GG+ S +P Y P + GG + P +P T Y P + SY P
Sbjct: 1531 GGMAFSPVPSPGYTPSSGGGYSPSSPVYSPGPGYSP-TSPSYSPASPSYSPTSPSYTP-- 1587
Query: 393 ENEVYYPQQPE----NPIFSPT 446
+ Y P P +P +SPT
Sbjct: 1588 GSPTYSPTSPSYSPTSPSYSPT 1609
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +3
Query: 240 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQ 419
+P Y+P + + Y +P T VY P + SY P + Y
Sbjct: 1652 SPIYSPSSPIYSPTSLSYSPTSPVYSP-TSPVYNPTSSAYSPTSPSYNPTSPS---YSYS 1707
Query: 420 PENPIFSPTQATELADPT 473
P +P +SPT + PT
Sbjct: 1708 PTSPSYSPTSPSYSYSPT 1725
>01_06_1341 - 36434098-36436080
Length = 660
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 295 ASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLK 450
A P+ R+ R+RC + + P P PA N +++ S + R++A L+
Sbjct: 21 AGPRARPRVSRSRCVASLASQPPTPPPAN-ANHLVQTLCASGRLARAAALLQ 71
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 672 LWVVRSHXXPRLPQEASSPVSSY*RQPSSPWAPQLRVL 559
LWVVR+ ++P+ ++ + R W PQL VL
Sbjct: 311 LWVVRASETSKIPEGFAAKAAKQGRGLIVTWCPQLEVL 348
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 357 QTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKI 482
+TLAD +P+ E E +P++ +SP+Q +PT +
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>09_04_0674 + 19376664-19376859,19377181-19377206,19377794-19377880
Length = 102
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 244 LTTTPELW-AVVWPRSCTASPK 306
+T +W A++WP SC++SPK
Sbjct: 40 VTNLSVIWRAILWPASCSSSPK 61
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +2
Query: 383 TATRKRSLLPSATREPDLQ--PH 445
T +++ SLLPS REPDL+ PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145
>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
Length = 200
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 378 SWYRQGSGGDDQVCTPGPLKAPVRLRAGG 292
SWY GSG V P APV + AGG
Sbjct: 132 SWYASGSGVGRMVQVPAIDAAPVCIAAGG 160
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 192 GSGDSNRGGLVMSRYYNPYYNPRAVGGGMAA 284
G G G YY PYY P A GG A+
Sbjct: 47 GGGYYGPYGPYYGPYYGPYYGPYASGGAAAS 77
>06_01_0127 - 977667-978719,978875-979051
Length = 409
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 286 SCTASPKPHRRLQRARCTYLIVAARPLPIPAT 381
S T SP +R L R+ +IVA RPLP+P T
Sbjct: 257 SSTMSPTFYRVLLRS----IIVAGRPLPVPPT 284
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 393 LVAVRSWYRQGSGGDDQVCTPGPLKAPVRLRA 298
+V + W+R G G + P P PV++ A
Sbjct: 43 VVILAVWFRSGGGAPPKAAAPPPRPPPVKIEA 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,837,514
Number of Sequences: 37544
Number of extensions: 428107
Number of successful extensions: 1435
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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