Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F21
(585 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 172 4e-42
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 167 2e-40
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 163 2e-39
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 142 4e-33
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 138 1e-31
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 137 2e-31
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 137 2e-31
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 135 8e-31
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 133 3e-30
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 133 3e-30
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 122 5e-27
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 122 8e-27
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 122 8e-27
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 122 8e-27
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 119 6e-26
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 116 5e-25
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 116 5e-25
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 116 5e-25
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 115 7e-25
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 109 4e-23
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 109 5e-23
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 105 8e-22
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 104 1e-21
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 104 1e-21
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 104 1e-21
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 104 1e-21
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 103 2e-21
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 101 9e-21
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 100 2e-20
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 91 1e-17
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 91 2e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 2e-16
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 87 3e-16
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 87 4e-16
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 2e-14
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 76 7e-13
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 76 7e-13
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 74 2e-12
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 72 9e-12
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 72 9e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 65 1e-09
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 64 3e-09
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 62 1e-08
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 61 2e-08
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 59 7e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 7e-08
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 58 1e-07
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 57 3e-07
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 57 3e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 57 3e-07
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 56 8e-07
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 56 8e-07
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 56 8e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 54 2e-06
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 52 8e-06
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 52 1e-05
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 51 2e-05
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 50 3e-05
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 49 7e-05
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 49 7e-05
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 49 7e-05
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 48 2e-04
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 48 2e-04
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 48 2e-04
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 48 2e-04
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 47 3e-04
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 46 5e-04
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 46 7e-04
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 46 7e-04
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 45 0.002
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 44 0.003
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 44 0.004
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 44 0.004
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 44 0.004
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 42 0.014
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 42 0.014
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 42 0.014
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 40 0.033
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 40 0.043
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 40 0.057
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 40 0.057
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 39 0.076
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 38 0.13
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.17
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 37 0.40
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 36 0.53
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 35 1.2
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 34 2.8
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 33 3.8
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 33 3.8
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 33 5.0
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 33 6.6
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 8.7
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 172 bits (419), Expect = 4e-42
Identities = 93/155 (60%), Positives = 98/155 (63%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AELG PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD+AFPR+N
Sbjct: 36 AELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMN 95
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 96 NMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSI 155
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
SFDQ+PLFV AVGITAF
Sbjct: 156 LGAINFITTIINMRMNNLSFDQMPLFVWAVGITAF 190
Score = 43.2 bits (97), Expect = 0.005
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 14 RK*IYSTNHKDIGTLYFIFG 73
RK +YSTNHKDIGTLYFIFG
Sbjct: 1 RKWLYSTNHKDIGTLYFIFG 20
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 167 bits (406), Expect = 2e-40
Identities = 89/153 (58%), Positives = 96/153 (62%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
SFDQ+PLF+ AVGITA
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITA 165
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 163 bits (397), Expect = 2e-39
Identities = 93/173 (53%), Positives = 106/173 (61%)
Frame = -3
Query: 580 AVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDE 401
AV T TN G S I +R I+E PAKC+EKI STD P CAI
Sbjct: 43 AVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLA 102
Query: 400 SGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXX 221
SGG TVHPVP P STI L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP
Sbjct: 103 SGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMI 162
Query: 220 XXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSARIKSLKDVPIIPDQIPKNK 62
KA AVT+ L I S PI PG PNSARIKSL DVP +P PK K
Sbjct: 163 GMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 142 bits (345), Expect = 4e-33
Identities = 80/154 (51%), Positives = 90/154 (58%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AELG PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 40 AELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMN 99
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 100 NMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSI 159
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
S Q PLFV +V ITA
Sbjct: 160 LGAINFITTAINMKPPAISQYQTPLFVWSVLITA 193
Score = 36.7 bits (81), Expect = 0.40
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 8 LFSTNHKDIGTLYLIFG 24
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 138 bits (333), Expect = 1e-31
Identities = 76/154 (49%), Positives = 87/154 (56%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 39 AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMN 98
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 99 NMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI 158
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
S Q PLFV AV +TA
Sbjct: 159 LGAINFITTTINMKPPTISQYQTPLFVWAVLVTA 192
Score = 35.5 bits (78), Expect = 0.93
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 26 YSTNHKDIGTLYFIFG 73
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 137 bits (332), Expect = 2e-31
Identities = 76/154 (49%), Positives = 87/154 (56%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AEL PG+L+GDDQIYN IVTAHA N L+PL++GAPD+AFPR+N
Sbjct: 28 AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMN 87
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 88 NMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSI 147
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
S Q PLFV AV ITA
Sbjct: 148 LGAINFITTIMNMKPPAISQYQTPLFVWAVLITA 181
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 137 bits (331), Expect = 2e-31
Identities = 74/153 (48%), Positives = 86/153 (56%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ + LFV +V ITA
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITA 175
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 135 bits (326), Expect = 8e-31
Identities = 74/154 (48%), Positives = 87/154 (56%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 39 AELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMN 98
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 99 NMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI 158
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ Q PLFV +V +TA
Sbjct: 159 LGAINFITTIINMKPPAITQYQTPLFVWSVLVTA 192
Score = 35.5 bits (78), Expect = 0.93
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 26 YSTNHKDIGTLYFIFG 73
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 133 bits (322), Expect = 3e-30
Identities = 71/153 (46%), Positives = 87/153 (56%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL +PGS++GDD +YN IVTAHA N VPL++GAPD+AFPR+NN
Sbjct: 41 ELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNN 100
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
I F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 101 ISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSIL 160
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ ++PLFV +V ITA
Sbjct: 161 GAMNFITTVMNMRTPGMTMSRIPLFVWSVLITA 193
Score = 32.3 bits (70), Expect = 8.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 26 YSTNHKDIGTLYFIFGYL 79
+S NHKDIG+LY +FG L
Sbjct: 9 FSCNHKDIGSLYLVFGAL 26
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 133 bits (321), Expect = 3e-30
Identities = 73/154 (47%), Positives = 87/154 (56%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AELG PG+L+G+D IYN IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 39 AELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMN 98
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 99 NMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSI 158
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ Q PLFV +V ITA
Sbjct: 159 LGAINFITTIINMKPPAMTQYQTPLFVWSVLITA 192
Score = 35.9 bits (79), Expect = 0.70
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY +FG
Sbjct: 7 LFSTNHKDIGTLYLLFG 23
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 122 bits (295), Expect = 5e-27
Identities = 67/153 (43%), Positives = 83/153 (54%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ D++ LF +V ITA
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITA 176
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 122 bits (293), Expect = 8e-27
Identities = 70/155 (45%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+
Sbjct: 38 ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 98 NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV A+ +TA
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTA 192
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 122 bits (293), Expect = 8e-27
Identities = 70/155 (45%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+
Sbjct: 38 ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 98 NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV A+ +TA
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTA 192
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 122 bits (293), Expect = 8e-27
Identities = 70/155 (45%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+
Sbjct: 38 ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 98 NNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV A+ +TA
Sbjct: 158 MLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTA 192
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 119 bits (286), Expect = 6e-26
Identities = 65/156 (41%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG I G+ Q+YN ++TAHA N VP+++GAPD+AFPR+
Sbjct: 41 ELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRL 100
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+SS
Sbjct: 101 NNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSS 160
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+ +LPLFV +V +TAF
Sbjct: 161 ILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAF 196
Score = 39.1 bits (87), Expect = 0.076
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLYFIFG
Sbjct: 8 LFSTNHKDIGTLYFIFG 24
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 116 bits (278), Expect = 5e-25
Identities = 68/156 (43%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PGS L G+ Q++N +V HA N L+PL++GA D AFPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 99 NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+ +LPLFV ++ ITAF
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAF 194
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 116 bits (278), Expect = 5e-25
Identities = 68/156 (43%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PGS L G+ Q++N +V HA N L+PL++GA D AFPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRI 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 99 NNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+ +LPLFV ++ ITAF
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAF 194
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 116 bits (278), Expect = 5e-25
Identities = 64/156 (41%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL P + L+G+ QIYN ++TAHA N LVP+++G+PD+AFPR+
Sbjct: 46 ELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRL 105
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSLH++G SS
Sbjct: 106 NNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASS 165
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S ++PLFV ++ +TAF
Sbjct: 166 ILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAF 201
Score = 37.5 bits (83), Expect = 0.23
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
I+STNHKDIGTLY IFG
Sbjct: 13 IFSTNHKDIGTLYLIFG 29
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 115 bits (277), Expect = 7e-25
Identities = 67/156 (42%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PGS L G+ Q++N +V HA N ++PL++GA D++FPRI
Sbjct: 39 ELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRI 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL ISS
Sbjct: 99 NSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S ++PLFV A+ ITAF
Sbjct: 159 LLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAF 194
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 109 bits (263), Expect = 4e-23
Identities = 64/155 (41%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L G++Q++N +V HA N ++PL++GA D AFPRI
Sbjct: 39 ELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRI 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ ISS
Sbjct: 99 NNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV A+ ITA
Sbjct: 159 LLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITA 193
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 109 bits (262), Expect = 5e-23
Identities = 64/154 (41%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
Frame = +3
Query: 123 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
EL PG I D+Q+YN+I+TAHA N L+PL LG PD+ FPR+N
Sbjct: 40 ELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPRLN 99
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
NI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+GISS
Sbjct: 100 NISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGISSL 159
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+L LF AV ITA
Sbjct: 160 LGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITA 193
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 105 bits (252), Expect = 8e-22
Identities = 58/154 (37%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Frame = +3
Query: 123 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
EL PG I D+Q+YN+I+T+H N L+P+++G PD+AFPR+N
Sbjct: 66 ELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLN 125
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GISS
Sbjct: 126 NVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSL 185
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+L LF AV ITA
Sbjct: 186 LGAINFIATLLNMRSPGIKLHKLALFGWAVVITA 219
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 104 bits (250), Expect = 1e-21
Identities = 55/150 (36%), Positives = 79/150 (52%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV +V ITA
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITA 210
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 104 bits (250), Expect = 1e-21
Identities = 55/150 (36%), Positives = 79/150 (52%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV +V ITA
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITA 210
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 104 bits (250), Expect = 1e-21
Identities = 55/150 (36%), Positives = 79/150 (52%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV +V ITA
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITA 210
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 104 bits (250), Expect = 1e-21
Identities = 55/150 (36%), Positives = 79/150 (52%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV +V ITA
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITA 210
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 103 bits (248), Expect = 2e-21
Identities = 62/155 (40%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+
Sbjct: 44 ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G SS
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSS 163
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
++ +PLF AV TA
Sbjct: 164 LLGAINFITTFINMRTIGMKYENVPLFAWAVLFTA 198
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 101 bits (243), Expect = 9e-21
Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Frame = +3
Query: 123 ELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
EL PG I ++Q+YN+I+TAHA N L+PL++G PD+AFPR+N
Sbjct: 68 ELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPRLN 127
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHLAG 467
NI F I+E G GTG T+ YPPLS +H G SVDLAIF+LHL+G
Sbjct: 128 NISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHLSG 187
Query: 468 ISS 476
+SS
Sbjct: 188 VSS 190
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 100 bits (240), Expect = 2e-20
Identities = 59/156 (37%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L G+ YN I T H N VP+++GAPD++FPR+
Sbjct: 42 ELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRL 101
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN F E G GTG TVYPPLSS +H G SVDL IFS HL GI S
Sbjct: 102 NNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGS 161
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
LPLFV +V +T+F
Sbjct: 162 IVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSF 197
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 91.5 bits (217), Expect = 1e-17
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AELG PG+L+GDDQ N IVTAHA N LVPL++GAPD+AFPR+N
Sbjct: 40 AELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMN 99
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 404
N+ F VE GAGTG TVYPPL+
Sbjct: 100 NMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 90.6 bits (215), Expect = 2e-17
Identities = 53/108 (49%), Positives = 60/108 (55%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 438 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
LAIFSLH+AG+ S + ++PLFV AV ITA
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITA 111
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 87.8 bits (208), Expect = 2e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 87.0 bits (206), Expect = 3e-16
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 342 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 509
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 510 XXXXXXXXSFDQLPLFV*AVGITAF 584
+ ++PLFV +V +TAF
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAF 236
Score = 32.7 bits (71), Expect = 6.6
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 29 STNHKDIGTLYFIFGYL 79
STNHKDIGTLY IF +
Sbjct: 33 STNHKDIGTLYLIFAII 49
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 86.6 bits (205), Expect = 4e-16
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Frame = +3
Query: 120 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S + ++PLF +V +TA+
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAW 299
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 438 LAIFS 452
LAI+S
Sbjct: 61 LAIYS 65
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 75.8 bits (178), Expect = 7e-13
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL +PG G Q+YN+++T H N ++PL+LGAP++AFPR+
Sbjct: 49 ELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRV 108
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + F + G G+ T YPPLS S+D I LH GI S
Sbjct: 109 NALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGIGS 167
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+ DQ+ +FV +T+F
Sbjct: 168 LLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSF 203
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 75.8 bits (178), Expect = 7e-13
Identities = 45/148 (30%), Positives = 61/148 (41%)
Frame = +3
Query: 138 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 317
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 318 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 497
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 498 XXXXXXXXXXXXSFDQLPLFV*AVGITA 581
SF LF+ A ITA
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITA 195
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 74.1 bits (174), Expect = 2e-12
Identities = 38/118 (32%), Positives = 59/118 (50%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL +PG + +Y++I+T HA N +PL++ D++ PR+NN
Sbjct: 42 ELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNN 101
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ + G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 102 LSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 72.1 bits (169), Expect = 9e-12
Identities = 47/117 (40%), Positives = 55/117 (47%)
Frame = +3
Query: 126 LGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNI 305
L G +IG QI VTA A L PL +GAP +A PR+ N+
Sbjct: 31 LSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRLXNM 90
Query: 306 RFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
F + G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 91 SFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 72.1 bits (169), Expect = 9e-12
Identities = 43/99 (43%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFPR+
Sbjct: 38 ELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRL 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
NNI F VE GAGTG TV LS I
Sbjct: 98 NNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 64.9 bits (151), Expect = 1e-09
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 123 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG+ I G+ Q+YN ++TAHA N VP+++G+PD+AFPR+
Sbjct: 42 ELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRL 101
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
NNI F +VE G G+G TV
Sbjct: 102 NNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
Score = 36.7 bits (81), Expect = 0.40
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 63.7 bits (148), Expect = 3e-09
Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF R+
Sbjct: 44 ELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARL 103
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
NNI F +VE GAGTG TV SS +
Sbjct: 104 NNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 342 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISS 476
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVAS 163
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 60.9 bits (141), Expect = 2e-08
Identities = 37/142 (26%), Positives = 60/142 (42%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 339 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 518
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 519 XXXXXSFDQLPLFV*AVGITAF 584
D++ ++ +T+F
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSF 199
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 59.3 bits (137), Expect = 7e-08
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 1/140 (0%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 345 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 521
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 522 XXXXSFDQLPLFV*AVGITA 581
++ +LPL + + +TA
Sbjct: 206 APGMTYMRLPLTIWGLWLTA 225
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 7e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 354 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 58.4 bits (135), Expect = 1e-07
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL +PG + + YN+++T+H N L+PL++GA D+AFPRIN
Sbjct: 122 ELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRINA 180
Query: 303 IRFXXX--XXXXXXXXXXXIVE-NGAGTG*TVYPPLS-----SNIAHRGRSVDLAIFSLH 458
I F I E A TG T+Y PLS N A+ G VDL + LH
Sbjct: 181 IAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLGLH 238
Query: 459 LAGISS 476
L+G+S+
Sbjct: 239 LSGVSA 244
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 57.2 bits (132), Expect = 3e-07
Identities = 43/153 (28%), Positives = 61/153 (39%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL PG I D YN + T H N L+P+++GA D+AFP++N
Sbjct: 63 ELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNL 122
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F +V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 123 LSF-YVYLAGAVVALFGMVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSIL 178
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPLFV ++ T+
Sbjct: 179 TGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATS 211
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 57.2 bits (132), Expect = 3e-07
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = +3
Query: 396 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 575
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 576 T 578
T
Sbjct: 132 T 132
Score = 35.5 bits (78), Expect = 0.93
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 230 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 355
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 57.2 bits (132), Expect = 3e-07
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 123 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL PG+ L G+ Q++N +V HA N L+PL++GA D++F R+
Sbjct: 39 ELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARL 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
NNI F +VE+GAGTG TV
Sbjct: 99 NNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 55.6 bits (128), Expect = 8e-07
Identities = 39/142 (27%), Positives = 55/142 (38%)
Frame = +3
Query: 135 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 314
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 315 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 494
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 495 XXXXXXXXXXXXXSFDQLPLFV 560
+F + LFV
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFV 141
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 55.6 bits (128), Expect = 8e-07
Identities = 42/153 (27%), Positives = 59/153 (38%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL PG I D YN T H N ++PL+LGA D+AFPR+N
Sbjct: 70 ELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNL 129
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ ++ G TG T Y P S AH +V +F + G SS
Sbjct: 130 LSL-YIYLAGAVLALWGMLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIV 185
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
++ ++PLFV A+ T+
Sbjct: 186 TGINFIVTCHTMRAPGITWFKMPLFVWAIYATS 218
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 55.6 bits (128), Expect = 8e-07
Identities = 39/118 (33%), Positives = 52/118 (44%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P L D +YN VT H N L+P PD+ FPR+N
Sbjct: 37 QLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNA 94
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ F ++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 95 LSF-----WLMPFSLSLLLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 54.0 bits (124), Expect = 2e-06
Identities = 38/153 (24%), Positives = 56/153 (36%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
A+L P + D YN I T H N +VPL +GA D+AFP +N
Sbjct: 80 AQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYLN 138
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
N+ F ++ G T Y PL+SN G + + L +AGI +
Sbjct: 139 NLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGTL 198
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 578
+ ++P+F IT
Sbjct: 199 MTGINFMVTILKMRTKGMTLMRMPMFTWTTLIT 231
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 52.4 bits (120), Expect = 8e-06
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF-XXXXXXXXX 338
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 339 XXXXXIVENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISS 476
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISS 169
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 52.0 bits (119), Expect = 1e-05
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 1/147 (0%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
AEL PG ++ +N + T H N ++PL +GAPD+AFPR+N
Sbjct: 65 AELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRLN 123
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
F + GA G T+Y PLS I G D+ I + GI S
Sbjct: 124 AFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIGS 183
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLF 557
+ ++P+F
Sbjct: 184 VASAINMLTTILCLRAPGMTMFRMPIF 210
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 51.2 bits (117), Expect = 2e-05
Identities = 36/146 (24%), Positives = 53/146 (36%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P + +++N + T H N VPL++GA D+AFPR+N+
Sbjct: 60 QLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNS 118
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
F + + G Y PLSS + VD I L + GI S
Sbjct: 119 FGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVS 178
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV 560
S ++PLFV
Sbjct: 179 GAINIFATIINLRAPGMSLQRVPLFV 204
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 50.4 bits (115), Expect = 3e-05
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 339 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 506
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 507 XXXXXXXXXSFDQLPLFV*AVGITA 581
+ +LPL + A+ ITA
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITA 230
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 49.2 bits (112), Expect = 7e-05
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 303 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 473
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV 560
S F ++P+FV
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFV 211
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 49.2 bits (112), Expect = 7e-05
Identities = 33/105 (31%), Positives = 44/105 (41%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
+YN +VT H N +P+ L D+ PR+N++
Sbjct: 151 VYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYM 210
Query: 342 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 211 ELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 49.2 bits (112), Expect = 7e-05
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 419
N +VPL +GA D+AFPR+N + + E+GA G T+Y PL++ I
Sbjct: 88 NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 578
G +DLA ++ L +S + ++P+F ++ T
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFT 200
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 48.0 bits (109), Expect = 2e-04
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL + +YN ++T+H N +PL++ A D+AFPRIN
Sbjct: 96 ELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINA 154
Query: 303 IRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
I F ++ A T T+Y PLS ++ +VD+ + LHL G+S+
Sbjct: 155 IAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGVSA 212
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 1/155 (0%)
Frame = +3
Query: 123 ELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
+L P + IG D+ YN I T H LVPL++G IAFPR+N
Sbjct: 57 QLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPRLN 114
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
+ V+ G G Y PLS G+ D+ + +S+
Sbjct: 115 AFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVSAL 174
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S D++PLFV ++ +T+F
Sbjct: 175 AIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSF 209
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 47.6 bits (108), Expect = 2e-04
Identities = 36/154 (23%), Positives = 55/154 (35%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+LG P + +YN + T H N +VPL++GA D+AFPR+N
Sbjct: 59 QLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRLNA 117
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ V G Y PL+ VD I + L G++S
Sbjct: 118 LSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVASIA 177
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+ +++PLFV + AF
Sbjct: 178 GALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAF 211
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 47.6 bits (108), Expect = 2e-04
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 419
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 420 RGRSVDLAIFSLHLAGISS 476
+ VDL + + +AG SS
Sbjct: 144 KSIGVDLILLGIIIAGFSS 162
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 47.2 bits (107), Expect = 3e-04
Identities = 41/153 (26%), Positives = 55/153 (35%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
EL P ++YN ++T H N L+PL++G D+AFPR+N
Sbjct: 55 ELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNA 113
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F V G T YPPLS G +L I SL L G SS
Sbjct: 114 VAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSSIL 170
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
+PLF A+ T+
Sbjct: 171 GAINFVTTILKMRIKDMDLHSMPLFCWAMLATS 203
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 46.4 bits (105), Expect = 5e-04
Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 1/150 (0%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P + + YN I+T H N +VPL+LGA D+A PR+N
Sbjct: 52 QLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVNA 111
Query: 303 IRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
+ GA G T Y P S A VD + ++ L G SS
Sbjct: 112 FSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFSSL 168
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 569
S ++P++V +V
Sbjct: 169 LGNANFVATIYNLRAQGMSLWKMPIYVWSV 198
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 46.0 bits (104), Expect = 7e-04
Identities = 32/104 (30%), Positives = 45/104 (43%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 345 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGT 202
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 46.0 bits (104), Expect = 7e-04
Identities = 32/104 (30%), Positives = 44/104 (42%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 345 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGT 201
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 44.8 bits (101), Expect = 0.002
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 1/155 (0%)
Frame = +3
Query: 123 ELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
EL G I DD +YNT + H N +PL++GA D+AFPR+N
Sbjct: 42 ELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVN 101
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
+ + + T YPP S I H + FS+ L G +S
Sbjct: 102 ALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFASI 158
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
+++L +FV A + AF
Sbjct: 159 LGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAF 192
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 423 GRSVDLAIFSLHLAGISS 476
G VD I+SL LA + S
Sbjct: 204 GIGVDYWIWSLTLASLGS 221
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 43.6 bits (98), Expect = 0.004
Identities = 26/106 (24%), Positives = 44/106 (41%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 560
VD +S+ ++GI + F+++ +F+
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFM 224
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 43.6 bits (98), Expect = 0.004
Identities = 34/154 (22%), Positives = 54/154 (35%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
A+L P S + YN + T H L+P +LG+ D+AFPR+
Sbjct: 56 AQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRLT 114
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
F + +G +YPPLSS + G + D + + IS+
Sbjct: 115 AYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISAI 174
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
S ++P+F +TA
Sbjct: 175 AAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTA 208
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 43.6 bits (98), Expect = 0.004
Identities = 31/145 (21%), Positives = 53/145 (36%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P + Q YN ++T H N +VPL +GA D++FP +N
Sbjct: 52 QLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFLNA 110
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ F + G T Y LS + +G +D + L ++G+ +
Sbjct: 111 LGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGTLI 168
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLF 557
++ +LPLF
Sbjct: 169 AGINFLATIINMRAPGMTYMRLPLF 193
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 41.5 bits (93), Expect = 0.014
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 4/147 (2%)
Frame = +3
Query: 153 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 332
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 333 XXXXXXXIVENGAGTG-*TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 500
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 501 XXXXXXXXXXXSFDQLPLFV*AVGITA 581
SF +LPL + A ITA
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITA 244
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 41.5 bits (93), Expect = 0.014
Identities = 26/112 (23%), Positives = 45/112 (40%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAF 235
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 41.5 bits (93), Expect = 0.014
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +3
Query: 123 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 300 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP 398
+ + V G G G T+YPP
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPP 159
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 40.3 bits (90), Expect = 0.033
Identities = 29/146 (19%), Positives = 53/146 (36%)
Frame = +3
Query: 120 AELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
A+L +P S + Y + T H L+P +LG+ D+A+PR++
Sbjct: 56 AQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRLS 114
Query: 300 NIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSX 479
F + +G +YPPL+S + G + D + + IS+
Sbjct: 115 AYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISAI 174
Query: 480 XXXXXXXXXXXXXXXXXXSFDQLPLF 557
S D++P++
Sbjct: 175 AAAVEIVVTVLRFRAPGMSLDRMPIY 200
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 39.9 bits (89), Expect = 0.043
Identities = 31/154 (20%), Positives = 54/154 (35%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P + D + YN + + H ++PL+LG D+ FPR+N
Sbjct: 64 QLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRLNA 122
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ ++ G YPPL+ G +D + IS+
Sbjct: 123 FGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISALV 182
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 584
S +++P+FV AV + +F
Sbjct: 183 AAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSF 216
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 39.5 bits (88), Expect = 0.057
Identities = 26/74 (35%), Positives = 30/74 (40%)
Frame = +2
Query: 236 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 415
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 416 T*RKIRRSCYFFTT 457
T R +F T
Sbjct: 122 TLGPFRSYNHFCPT 135
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 39.5 bits (88), Expect = 0.057
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 425
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 569
D A ++ L GI + LPLFV AV
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAV 218
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 39.1 bits (87), Expect = 0.076
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 339 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 509
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 510 XXXXXXXXSFDQLPLFV*AVGITA 581
+F +LP+ + + ITA
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITA 233
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 38.3 bits (85), Expect = 0.13
Identities = 32/146 (21%), Positives = 52/146 (35%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 302
+L P + + Y+++ T H N L PL+LG+ D+AFPR+
Sbjct: 77 QLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRLTA 135
Query: 303 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 482
+ + G Y PL+S G ++D+ + L GIS+
Sbjct: 136 FSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGISTTG 195
Query: 483 XXXXXXXXXXXXXXXXXSFDQLPLFV 560
S D+LP+ V
Sbjct: 196 GAANFVVTLLRMRAHGMSIDRLPIIV 221
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.17
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 123 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 297 NNIRF 311
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia
polymorpha (Liverwort)
Length = 802
Score = 36.7 bits (81), Expect = 0.40
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 36.3 bits (80), Expect = 0.53
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +3
Query: 129 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 308
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 309 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS 407
F + +G +G T Y LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 35.1 bits (77), Expect = 1.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 123 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 299
+L PG + + +N + T HA N +PL++GA D+AFPR+N
Sbjct: 57 QLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRLN 114
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2;
Eukaryota|Rep: Maturase-like protein - Pellia epiphylla
Length = 843
Score = 33.9 bits (74), Expect = 2.8
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGT Y IFG
Sbjct: 9 LFSTNHKDIGTPYLIFG 25
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 33.5 bits (73), Expect = 3.8
Identities = 25/101 (24%), Positives = 34/101 (33%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
YN ++T HA N +PL LG D+A PR+N
Sbjct: 74 YNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVV 133
Query: 345 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 467
G T Y PL+ + G SV + L+ G
Sbjct: 134 LGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILNGLG 174
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 33.5 bits (73), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSS 407
N LVPL +GA D+AFPR+N + + G T+Y PL++
Sbjct: 89 NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNT 143
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 33.1 bits (72), Expect = 5.0
Identities = 31/146 (21%), Positives = 48/146 (32%)
Frame = +3
Query: 144 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 323
L+G D YN I T H L+P +L A D+ FPR++
Sbjct: 75 LVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYI 132
Query: 324 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 503
+ G +YPPL+ G + D + + IS+
Sbjct: 133 VGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIV 192
Query: 504 XXXXXXXXXXSFDQLPLFV*AVGITA 581
S ++P+F A+ I A
Sbjct: 193 GTLRTRPPGMSLTRMPIFAWAMLIFA 218
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 32.7 bits (71), Expect = 6.6
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 419
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 420 RGRSVDLAIFSLHLAGISS 476
G +L +L L+G+SS
Sbjct: 139 YGLGTNLIQIALILSGLSS 157
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 8.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 320 TPLPYIINFKKNCRKWCRN 376
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,203,411
Number of Sequences: 1657284
Number of extensions: 6730568
Number of successful extensions: 12426
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 12097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12365
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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