Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F20
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488... 37 0.019
06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351... 35 0.057
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202... 29 2.8
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601... 29 4.9
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 29 4.9
01_02_0011 + 10146944-10147067,10147871-10148025,10148137-101483... 29 4.9
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 29 4.9
12_01_0541 + 4251931-4254141 28 6.5
09_06_0313 + 22240971-22242176 28 8.6
05_07_0235 + 28575293-28575551,28577346-28577521,28579838-285800... 28 8.6
>02_04_0223 +
21047240-21047304,21047577-21047706,21048783-21048871,
21049592-21049647,21049721-21049776,21050163-21050202,
21050505-21050629,21050715-21050808,21051401-21051480,
21051598-21051640,21057539-21057630,21057746-21057919
Length = 347
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 141 LPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIID 311
+ E DKV KGN+LEPDS+ + +EG AVV + + P +S G ++++
Sbjct: 101 ISESWADKVIWNKGNLLEPDSLKDIMEGVSAVVPFIRLLDLKLPRGSMSTGLISMME 157
>06_02_0338 -
14723277-14723444,14724564-14724836,14735044-14735160,
14735276-14735593
Length = 291
Score = 35.1 bits (77), Expect = 0.057
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Frame = +3
Query: 165 VEIVKGNVLE-PDSVHEAVEGTDAVVITLGTR---NDLAPTSDLSEGTKNIIDAMRAKNV 332
+++V+ +V+E D + +A+ G DAVV G R + AP + GT N+++A R V
Sbjct: 104 LQLVRADVMEGTDKLVDAIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGV 163
Query: 333 KTVSACLSAFLFYEQ---EKVPPIFVNLN------EDHKRMFQALKDSGLNWIAAFPPHF 485
T +S+ L + + P + LN + + ++ SG+N+ P
Sbjct: 164 -TRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGL 222
Query: 486 TDDPSREMIIEVNPEKTPGR-TIAKCDLGTFLVDAL--SEPKYYKAV 617
T+ P I+ + PE T +I++ + V+AL E YK V
Sbjct: 223 TEQPPTGNIV-MEPEDTLYEGSISRQQVAEVAVEALLCREESSYKVV 268
>02_05_0140 -
26218828-26219759,26219885-26220002,26220089-26220278,
26220380-26220514,26220617-26220714,26221697-26221866,
26222586-26222961
Length = 672
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 478 GGNAA--IQFKPLSFRAWNILLWSSFKLTKIGGTFSCS 371
GGNA +QF +AW + F LT +G CS
Sbjct: 240 GGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICS 277
>09_04_0529 +
18356964-18358307,18359829-18359944,18360036-18360133,
18360234-18360418
Length = 580
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 271 GARSFLVPRVMTTASVPSTASCTESGSRTF 182
GA L+PR TT++ + A ESG+ TF
Sbjct: 320 GAGQRLIPRTTTTSASGACAGADESGNETF 349
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 132 PAKLPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTS 278
P+ E LK+K + GNVL+ D++ A A+V + GT +++A S
Sbjct: 787 PSISEEELKEKQANINGNVLDVDTM--ASSNNLAIVGSTGTGSEIADNS 833
>01_02_0011 +
10146944-10147067,10147871-10148025,10148137-10148319,
10149448-10149800,10150036-10150207
Length = 328
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Frame = +3
Query: 42 CFFGSTGVXXXXXXXXXXXXXXXVRAFVRXPAKLPE-HL------KDKVEIVKGNVLEPD 200
C G+ G VR +R PA + HL ++ + + + +VL+ +
Sbjct: 11 CVTGAGGFIGSWLVKELLHRGYFVRGAMREPADIKNAHLHVLDGAREGLSLYRADVLDRN 70
Query: 201 SVHEAVEGTDAVV-ITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTV 341
S+ A D V + ND EGTKN+I+A VK V
Sbjct: 71 SLRAAFALCDGVFHVASPVSNDPELLPAAIEGTKNVINAAADMGVKRV 118
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 147 EHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRND---LAPTSDLSEGTKNIIDAM 317
E K ++ + + +VL+ +S+ A D V +D L PT+ EGTKN+I+A
Sbjct: 52 ERAKRRLSLHRADVLDCNSLRAAFNLCDGVFHVASPVSDDPELLPTA--IEGTKNVINAA 109
Query: 318 RAKNVKTV 341
+K V
Sbjct: 110 ADMGIKRV 117
>12_01_0541 + 4251931-4254141
Length = 736
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -2
Query: 445 SFRAWNILLWSSFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPS 287
SFR +++W+ F L G +CS + AD+QA T+++ + +M L+ S
Sbjct: 85 SFRNDMVVVWACFLLGCADGIAACSLD-GADQQARTMISQATQVFYVMLLLIS 136
>09_06_0313 + 22240971-22242176
Length = 401
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = +2
Query: 557 VRPRHIPSGRAFRTQI---LQGSHWHLQCAQRMKEPIV 661
+RP HIP A R +HWH CA + P V
Sbjct: 7 LRPAHIPRSTAVRPPCATPFSRAHWHATCAAIRRVPRV 44
>05_07_0235 +
28575293-28575551,28577346-28577521,28579838-28580041,
28580177-28580330,28580434-28580780
Length = 379
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 EHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKN--IIDAMR 320
E+ +D V V NV++P+S+++A G V T + L +S TK+ I++A
Sbjct: 100 ENGRDGVWTVMANVMDPESLNQAFNGCVGVFHT----SSLIDPGGISGYTKHMAILEARA 155
Query: 321 AKNVKTVSACL 353
A+ V V AC+
Sbjct: 156 AEQV--VEACV 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,936,534
Number of Sequences: 37544
Number of extensions: 376715
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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