Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F19
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 98 9e-22
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 44 3e-05
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.2
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 4.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 4.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.2
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 5.6
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 26 5.6
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 9.8
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 9.8
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 25 9.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 9.8
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.8
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 98.3 bits (234), Expect = 9e-22
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Frame = +2
Query: 236 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 412
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 413 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 571
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 572 IVKPDNTYEVLIDNEKVESGDLXADWDFLPP 664
IVKPD T+EV I+ + V G L +DF+PP
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLF--YDFIPP 235
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 43.6 bits (98), Expect = 3e-05
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 8/190 (4%)
Frame = +2
Query: 116 FEEQFPDX---SWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-S 283
F EQF +W S W K+ G + L S D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 284 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDI 457
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 458 CGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 631
CG I SY GK HL + T +YTL+++ + T + D V +G
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTG 207
Query: 632 DLXADWDFLP 661
D+ ++ P
Sbjct: 208 DVGTNFFHSP 217
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 365 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 532
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 533 R--CKDDVYTH 559
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 377 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 556
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 557 HLYTLIVKP 583
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 81 KLTTTKXNSLHFRCTGPPDSTKDRPRI 1
KLT+ K N LH PP +K+ RI
Sbjct: 621 KLTSHKCNHLHSHLDKPPKVSKEEDRI 647
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 270 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 175
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 494 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES 628
S + K H KK +D Y+H+Y + P + + + ++ ES
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPES 181
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 2 IRGLSFVESGGPVHRKCK 55
+RGL FV S G +HR K
Sbjct: 126 LRGLKFVHSAGVIHRDLK 143
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -3
Query: 418 VHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 254
V++ LL L ++ T + + +FDS+ + +R G++ E RI+R
Sbjct: 805 VNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYR 859
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +2
Query: 248 KTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 421
KT Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 952 KTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 206 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNE 310
A F S E KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 191 KFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQ 331
K LT +S+ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 221 SDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKL 400
++ ED++GL SED + +A + F +S+ + L + +++ + L+ F+ +L
Sbjct: 236 NESEDEEGLSLSEDGKKFA-NIDFGDYSSSEEFLKEHLNILADEE-ESDAILLEAFNAEL 293
Query: 401 EQK 409
E K
Sbjct: 294 EGK 296
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 119 EEQFPDXSWESNWVYS 166
EE+FPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 512 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 625
H I + + +++ + HL TL KPD+ ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 69 TKXNSLHFRCTGPPDSTKDRP 7
T NS HF C PP K+ P
Sbjct: 280 TCPNSFHFTCIDPPIEEKNLP 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,023
Number of Sequences: 5004
Number of extensions: 62377
Number of successful extensions: 210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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