Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F19
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 226 1e-59
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 223 1e-58
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 214 5e-56
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 212 2e-55
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 108 4e-24
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 71 6e-13
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 5.8
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 5.8
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 5.8
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 5.8
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 226 bits (553), Expect = 1e-59
Identities = 105/187 (56%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
Frame = +2
Query: 110 VFFEEQFPDXSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALS 283
VFF+E+F D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+S
Sbjct: 31 VFFQEKFED-GWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAIS 88
Query: 284 RKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICG 463
++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDICG
Sbjct: 89 AEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICG 148
Query: 464 PGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXA 643
TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG +
Sbjct: 149 YSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYE 208
Query: 644 DWDFLPP 664
WD LPP
Sbjct: 209 HWDILPP 215
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 223 bits (545), Expect = 1e-58
Identities = 99/187 (52%), Positives = 136/187 (72%), Gaps = 2/187 (1%)
Frame = +2
Query: 110 VFFEEQFPDXSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALS 283
V FEE+F D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+S
Sbjct: 29 VIFEERFED-GWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAIS 86
Query: 284 RKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICG 463
K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDICG
Sbjct: 87 AKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICG 146
Query: 464 PGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXA 643
TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG +
Sbjct: 147 TQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYT 206
Query: 644 DWDFLPP 664
DWD LPP
Sbjct: 207 DWDILPP 213
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 214 bits (523), Expect = 5e-56
Identities = 100/197 (50%), Positives = 133/197 (67%), Gaps = 12/197 (6%)
Frame = +2
Query: 110 VFFEEQFPDXSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLKT 253
VFF+E+F D WE WV SE G++ T+GK++ D +D G++T
Sbjct: 27 VFFQEKFDD-GWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQT 85
Query: 254 SEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPY 433
SED RFYA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETPY
Sbjct: 86 SEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPY 145
Query: 434 EIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDN 613
IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTLI++PD Y +LIDN
Sbjct: 146 SIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILIDN 205
Query: 614 EKVESGDLXADWDFLPP 664
+ ++G + DW+ +PP
Sbjct: 206 TEKQTGSIYDDWNIIPP 222
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 212 bits (517), Expect = 2e-55
Identities = 95/187 (50%), Positives = 130/187 (69%), Gaps = 2/187 (1%)
Frame = +2
Query: 110 VFFEEQFPDXSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALS 283
V FEE+F D W S WV S+ E G FK TAG + DP DD+G++T+ DA+ +A+S
Sbjct: 29 VIFEERFDD-DWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKHFAIS 86
Query: 284 RKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICG 463
KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGPDICG
Sbjct: 87 AKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICG 146
Query: 464 PGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXA 643
TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G +
Sbjct: 147 DQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYT 206
Query: 644 DWDFLPP 664
DWD LPP
Sbjct: 207 DWDILPP 213
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 108 bits (259), Expect = 4e-24
Identities = 73/192 (38%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +2
Query: 116 FEEQFPDXSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF- 292
F E F D S+E WV S GK+ K K SD +D GL SE A+ YA+ ++
Sbjct: 27 FYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIKELD 80
Query: 293 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICG 463
+P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD CG
Sbjct: 81 EPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140
Query: 464 PGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 625
T KVH I +K GK H +K D +H+YT I+KPDN +L+D E+ +
Sbjct: 141 -STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKK 199
Query: 626 SGDLXADWDFLP 661
+ + DF P
Sbjct: 200 KANFLSADDFEP 211
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 71.3 bits (167), Expect = 6e-13
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +2
Query: 503 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWDFLPP 664
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPP 568
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 613 IVNEDFIGVVRFHNQSVQMCVDI 545
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 456 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 313
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 363 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 184
+S+ L+ N + G+P L GLN +++++ + P+ SSG L FP + N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796
Query: 183 SFPGCSL 163
G L
Sbjct: 797 GLCGIPL 803
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 427 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 254
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 598 GSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFR 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,192,188
Number of Sequences: 37544
Number of extensions: 427377
Number of successful extensions: 1059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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