Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F18
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   0.86 
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   2.0  
04_03_0663 - 18487295-18487795                                         27   3.5  
12_02_1057 + 25733376-25735439                                         27   6.1  

>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 70  TRCSSCFWSTPCSRRMVCPGTR*VEHN 150
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 70  TRCSSCFWSTPCSRRMVCPGTR 135
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 70  TRCSSCFWSTPCSRRMVCPGTR*VEHN 150
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>04_03_0663 - 18487295-18487795
          Length = 166

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 140 THLVPGQTILLEQGVLQKQELQRVQQVG 57
           T + P QT + +Q   QKQ  QR+Q++G
Sbjct: 63  TQIKPNQTKIKQQEENQKQSSQRIQKLG 90


>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 70  TRCSSCFWSTPCSRRMVCPGTR*VEHN 150
           T+C  C    P     VCPG+R  + N
Sbjct: 93  TQCQECLAGAPAGIVQVCPGSRTADAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,798,254
Number of Sequences: 37544
Number of extensions: 76771
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)