Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F18
         (368 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124516-1|BAC85871.1|  567|Homo sapiens protein ( Homo sapiens ...    30   2.0  
BC025728-1|AAH25728.1|  556|Homo sapiens ZNF671 protein protein.       28   8.2  

>AK124516-1|BAC85871.1|  567|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42525 fis, clone BRACE3001391, highly  similar
           to Polycystin precursor. ).
          Length = 567

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 55  RPTCCTRCSSCFWSTPCSRRMVCPGTR*VEHNCRRTSRRHRSA 183
           RPT  T CSS FW TP    +    T        R   RHR A
Sbjct: 21  RPTSVTWCSSSFWWTPIPFPLAISATTPSPPRWPRWRSRHRPA 63


>BC025728-1|AAH25728.1|  556|Homo sapiens ZNF671 protein protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 146 CSTHLVPGQTILLEQGVLQKQELQRVQQVGRYLQPM 39
           C    +  QT++L Q V   ++L+ V  VG  L+PM
Sbjct: 512 CGREFIRKQTLVLHQRVHAGEKLKSVANVGESLRPM 547


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,294,690
Number of Sequences: 237096
Number of extensions: 452364
Number of successful extensions: 1010
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)