Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F18
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   0.79 
U80842-13|AAB37943.1|  208|Caenorhabditis elegans Hypothetical p...    27   5.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    26   7.3  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    26   7.3  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   9.7  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   9.7  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   9.7  

>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 64  CCTRCSSCFWSTPCSRRMVCP 126
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U80842-13|AAB37943.1|  208|Caenorhabditis elegans Hypothetical
           protein ZC239.2 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 193 WIRSRLECCINTLHWLI 243
           WIR R+   +N+ HWLI
Sbjct: 138 WIRERILNIVNSTHWLI 154


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 113  LLEQGVLQKQELQRVQQVGRYLQP--MKPLAPVF 18
            L+EQ ++ +++L+R     R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 113  LLEQGVLQKQELQRVQQVGRYLQP--MKPLAPVF 18
            L+EQ ++ +++L+R     R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 52  YRPTCCTRCSSCFWSTPCSRRMVC 123
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 52  YRPTCCTRCSSCFWSTPCSRRMVC 123
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 52  YRPTCCTRCSSCFWSTPCSRRMVC 123
           YR  C   CS CF+S   S    C
Sbjct: 291 YRSVCPKSCSQCFYSNSTSSYECC 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,828,161
Number of Sequences: 27780
Number of extensions: 65658
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)