Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F17
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    30   0.022
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.27 
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    26   0.27 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    26   0.36 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          26   0.36 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.4  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
 Frame = +3

Query: 126 IPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNEST------KVSYVNER--RLQ 281
           I   AT P + N+  ++  S  + + +K+ TST +S+N +       + ++  E+  RL+
Sbjct: 29  IHHGATPPQSPNQQYTKDCSSPTPS-DKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLE 87

Query: 282 RDFMRSNYTNRPK 320
           ++F + NY +RP+
Sbjct: 88  KEFFKENYVSRPR 100


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 644 FFFSTATWICVTM*SFYRIRQLFQAFNKLFHFISRC 537
           F +   TWIC  +    +  +L + F +L HF ++C
Sbjct: 86  FAYLETTWICTLL----KKDKLLELFKRLIHFDTKC 117


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 644 FFFSTATWICVTM*SFYRIRQLFQAFNKLFHFISRC 537
           F +   TWIC  +    +  +L + F +L HF ++C
Sbjct: 104 FAYLETTWICTLL----KKDKLLELFKRLIHFDTKC 135


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 174 EAASLTSKNHEKVLTST-GNSLNESTKVSYVNER--RLQRDFMRSNYTNRPKNI 326
           E +   +++HE  +    G S  +  + +Y + +   L+R+F RS Y  RP+ I
Sbjct: 63  EVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCRPRRI 116


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 174 EAASLTSKNHEKVLTST-GNSLNESTKVSYVNER--RLQRDFMRSNYTNRPKNI 326
           E +   +++HE  +    G S  +  + +Y + +   L+R+F RS Y  RP+ I
Sbjct: 83  EVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKYLCRPRRI 136


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 505 INPQKIILKIQHLEIKWNSLLKAWNSCRIL*KDYIVTQIHVAVLKKNHN 651
           INP +  L   +  + W+ +L   N   IL K +         +  NHN
Sbjct: 619 INPHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFPRWRQTLAMWLNHN 667


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,980
Number of Sequences: 336
Number of extensions: 3847
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)