Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_F17
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0384 - 7972067-7972162,7972776-7972985,7973083-7973286,797... 31 0.93
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 29 2.8
06_02_0097 + 11710560-11710859,11712605-11713270 29 2.8
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 2.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 2.8
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 2.8
03_02_0703 - 10535082-10536779 29 2.8
04_01_0308 + 4188726-4190351 29 3.7
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 29 4.9
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 28 6.5
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270... 28 6.5
05_07_0350 - 29457444-29457871,29458786-29461456 28 8.6
04_04_0967 + 29782460-29783725 28 8.6
03_04_0243 + 19298293-19299117 28 8.6
>03_02_0384 -
7972067-7972162,7972776-7972985,7973083-7973286,
7973381-7973497,7973692-7973810,7974001-7974341,
7974492-7974646,7974948-7975109,7975262-7975321
Length = 487
Score = 31.1 bits (67), Expect = 0.93
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 96 QNEGEDDEQKIPQSAT-SPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNER 272
QNE +DD++ + + SPV + K + S +++ T G+ + + VS N++
Sbjct: 307 QNESDDDDEDTDEDESPSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYS-TPHVSKSNQK 365
Query: 273 RLQRDFMRSNYTNRPKNIPKETPDVKNM 356
R QR S PK PK PD K +
Sbjct: 366 RRQRG-DDSKTCATPKK-PKIEPDTKKI 391
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 408 AFGSGCSMEQMI---NIRDQQEHLARLHFRLCADVDKPT-EDNFEN 533
+F S C ++ + NI D E L +H C D DKP E N +N
Sbjct: 435 SFNSSCEVQCPLCGSNISDLSEELRLVHTNSCLDGDKPAKEPNSDN 480
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 589 FDNCSKLLTSCSILSLDAEFSKLSSVGLSTSAHKRKCNLAKCSC 458
F SKL C I S DA+F++ ++ + K C+ AK C
Sbjct: 109 FSCWSKLSNKCHICSRDAKFARNIALEKIVESIKSSCSYAKWGC 152
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 435 VPCYNLIQKHLTFLCENHLIAQVVLSPCS*HLGFLLVCSWVCWY 304
VPC K + +LC + Q V++ C + F V S W+
Sbjct: 598 VPCVVPNNKFMQYLCRKGMTTQNVMAACDFDMRFTFVLSGWAWF 641
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +3
Query: 51 MSLHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSN--------KISSEAASLTSKNHE 206
+ L LEEA ++ + +G D EQ + +S V S+ ++ EAAS K E
Sbjct: 466 LKLQLEEAEARVEVAEKKGSDLEQLLGESENKLVASSGELKLLEERVQQEAASSAEK--E 523
Query: 207 KVLTSTGNSLNESTKVSYVNERRLQRD 287
K+L NS+ E+ K +NE + D
Sbjct: 524 KLLEEATNSV-EAYK-EKINELQASLD 548
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/106 (20%), Positives = 42/106 (39%)
Frame = +3
Query: 57 LHLEEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSL 236
+++ E E M+N+ ED+ KIPQ + ++ + ++S + + E T G L
Sbjct: 876 VNMVECGEDINPMKNDNEDEHDKIPQPLENAISDSNMTSVFSGVPEA--ENADTDKGLFL 933
Query: 237 NESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLE 374
+ E + +T + E +V +E L E
Sbjct: 934 AKKDSEDMPKEVVGAEGSQQDQFTTSTHEVVDEHNEVAEVEPVLAE 979
>03_02_0703 - 10535082-10536779
Length = 565
Score = 29.5 bits (63), Expect = 2.8
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Frame = +3
Query: 219 STGNSLNESTKVSYV---NERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDF 389
+ GN+ N + + R+++ S N KN P+ + +K+ E+ L +DD
Sbjct: 66 TAGNATNPTDLAKAIFKATSERIEKAVRESAVLNDLKNDPRTSDALKDCEELLDYAIDDL 125
Query: 390 HT--GKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFENSAS---RDKM 554
T KL F + + +++ A + C D FENS S +KM
Sbjct: 126 KTTFDKLGGFQTSNFKRAVDDVKTWLSS-ALTYQETCLD-------GFENSTSTEASEKM 177
Query: 555 EQLVKSLEQLSNSI 596
+ +KS ++L+ +I
Sbjct: 178 RKALKSSQELTENI 191
>04_01_0308 + 4188726-4190351
Length = 541
Score = 29.1 bits (62), Expect = 3.7
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 13/206 (6%)
Frame = +3
Query: 66 EEANETQQLMQNEGEDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNES 245
E ++ QL+ +G+ ++Q ++A ++S K E SL +N + L N S
Sbjct: 9 ELEHKNTQLLHEKGKLEKQLETKAAAQAISSQKEEVER-SLKGENDKLQLEDLTMEENYS 67
Query: 246 TKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGK--LSAFGS 419
+ V + + + + K + +K + L L++ H K + +
Sbjct: 68 QSEAEVEQFQKELGALVEEKEVAAKTFDDDKEKMKMESEYLKRRLEEIHDNKDFMKTENN 127
Query: 420 GCSMEQMINIRDQ---QEHLARLHFRLCADVDKPTED----NFENSASRDKMEQLVKSLE 578
E +I + Q + + RL L A + N +N K+E L + LE
Sbjct: 128 KLQSEALIVEKKQIMFEAEIKRLKMELGAVTEAKEVAAKAFNAQNEEITKKLEDLKRKLE 187
Query: 579 QLSNSIERLHCDTNPCS----STEEK 644
++ + + + +TN +TEEK
Sbjct: 188 EIQTNKDLVEGETNELQPEVFATEEK 213
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 108 EDDEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNS 233
EDD P + TSP +N SS AS T + +TS G+S
Sbjct: 221 EDDITDAPGAPTSPDDTNDTSSNQASNTDGLPKPNMTSKGSS 262
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 240 ESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETP 341
E + +SY R +QR FM NY K P+ TP
Sbjct: 254 ELSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGTP 287
>05_05_0298 -
23926266-23926442,23926573-23926632,23926822-23927029,
23927471-23927703,23928806-23928860,23928943-23929649
Length = 479
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 474 RLHF-RLCADVDKPTEDNFENSASRDKMEQLV 566
RLHF R+CAD + T FE KM+ L+
Sbjct: 326 RLHFGRICADGENATLSEFEQVLRAMKMDSLI 357
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 528 ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 635
E+S R M ++V+ LEQ + R H P +ST
Sbjct: 989 EHSVERPTMREVVQMLEQAKQQLSRCHPPPPPPTST 1024
>04_04_0967 + 29782460-29783725
Length = 421
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 342 DVKNMEKALLELLDDFHTGKLSA 410
DV +M KALLELL D + KLS+
Sbjct: 236 DVDDMVKALLELLSDGASAKLSS 258
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 238 TNPRRCRT*MKDVFKEILCARTIPTDPRTYQKKPQMLRTWR 360
T+PRR R+ + C+R P+ PR+ P+ R WR
Sbjct: 207 TSPRRARS-------SLTCSRVAPSTPRSATLLPRQPRRWR 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,007
Number of Sequences: 37544
Number of extensions: 340597
Number of successful extensions: 1029
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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