Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F16
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 321 FCIFMYVFFVVFVSCRVLKP*ITQAAYIATPYL 223
           FC F+Y+F V ++   V +  I    Y    ++
Sbjct: 147 FCYFIYLFTVYYIYYSVHEASIINFGYTLAKFM 179



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 78  NCXIFILKTELQKXLESDIHLFTIL 152
           NC  F++   L   +  ++ LFTIL
Sbjct: 264 NCPRFLIMLALSYTVIQEVMLFTIL 288


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 262 GLKNPATYENYKEYIHK 312
           GLK P   E++++ +HK
Sbjct: 291 GLKAPPGVEHFEDVVHK 307


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 228 YLFTEFNDGFIVH 190
           + FT+F++GF  H
Sbjct: 327 FFFTQFSEGFSTH 339


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 228 YLFTEFNDGFIVH 190
           + FT+F++GF  H
Sbjct: 327 FFFTQFSEGFSTH 339


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 228 YLFTEFNDGFIVH 190
           + FT+F++GF  H
Sbjct: 327 FFFTQFSEGFSTH 339


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 228 YLFTEFNDGFIVH 190
           + FT+F++GF  H
Sbjct: 327 FFFTQFSEGFSTH 339


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,343
Number of Sequences: 336
Number of extensions: 2821
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)