Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F16
         (745 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   3.3  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   5.7  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   7.5  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 206  MALLSIFLLFYTANKHVTKYSKQMNITFQXFL*FS 102
            M+L S+F     AN+H+ KY+         FL FS
Sbjct: 959  MSLKSLFKELEKANQHLKKYNHVNKKALDQFLSFS 993


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 577 IATLLRDKAIILHLSDAFKDYKED 648
           IA  LRDK + L L +  +DY  D
Sbjct: 587 IAEALRDKGVPLQLCNILQDYFTD 610


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 251 RQHISQHPTSLQNLTMALLSIFLLFYTANKHVTKYSKQMNITFQXFL 111
           RQHI  +  SL     A  S  +   T NKH ++  K   I    +L
Sbjct: 90  RQHIETNAQSLATHFEANKSFKITVETYNKHFSQREKVAKIETMQYL 136


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,316
Number of Sequences: 2352
Number of extensions: 11880
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)