Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F16
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        29   3.5  
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    29   3.5  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   8.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   8.0  
AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 514 KETLEKKRYECSTFACALSAPIATLLRDKAIILHLSDAFKDYKE 645
           K  L K + EC    C  +  +  + RDK + L L+ +F+D++E
Sbjct: 458 KALLAKLKTECG---CQFTQKLENMFRDKELWLTLATSFRDWRE 498


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 514 KETLEKKRYECSTFACALSAPIATLLRDKAIILHLSDAFKDYKE 645
           K  L K + EC    C  +  +  + RDK + L L+ +F+D++E
Sbjct: 458 KALLAKLKTECG---CQFTQKLENMFRDKELWLTLATSFRDWRE 498


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 454  CVSCLGILQEENWSECFNMVKETLEKK-RYECSTFACALSAPIA 582
            C+ C GI    N +   N +K   EKK RY C T  C  ++ +A
Sbjct: 1630 CIHCSGIAF--NHTAIQNHMKSHEEKKVRYSCGTCLCTFASDLA 1671


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 454  CVSCLGILQEENWSECFNMVKETLEKK-RYECSTFACALSAPIA 582
            C+ C GI    N +   N +K   EKK RY C T  C  ++ +A
Sbjct: 1630 CIHCSGIAF--NHTAIQNHMKSHEEKKVRYSCGTCLCTFASDLA 1671


>AC006680-9|AAK72299.1|  353|Caenorhabditis elegans Hypothetical
           protein R13D7.2 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +3

Query: 42  HATHC*VVLFFRNCXIFILKTELQKXLESDIHLFTILRYMLVSSVK*KEDGQ 197
           H T     LF R C   I+K E  + LE    LF+ILR    SS K +E+ Q
Sbjct: 191 HCTSLHDELFSRQCEPMIMKREKDQVLEQMNGLFSILR----SSKKTEEEKQ 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,512
Number of Sequences: 27780
Number of extensions: 255116
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)