Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F14
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617...    29   4.0  
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549...    28   7.0  
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695...    28   7.0  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    28   9.3  
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    28   9.3  

>02_05_0172 +
           26460884-26461084,26461168-26461391,26461726-26461756,
           26462247-26462834
          Length = 347

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 292 SKSIRHPRTNSSNRCLSTVSGSGR*GVAASIFCRSL-TPRSKSPGPSPNSCFITSACFNE 116
           S+S   PRTNS  R L+  SG G  G+       ++   R   P     S  +T A    
Sbjct: 8   SRSPAPPRTNSGERGLAAGSGGGGGGMDRWTGVLNVPLSRGGPPFRVAASLVLTPAKTLA 67

Query: 115 GPCKNAIVHTATXI 74
            PC NAI+ T   +
Sbjct: 68  VPCANAILFTGDRV 81


>08_02_1133 +
           24554037-24554043,24554524-24554797,24554890-24554989,
           24555089-24555355,24555455-24555532,24555616-24555717,
           24555798-24555847,24555916-24556051,24556374-24556490,
           24556659-24556818,24557450-24557811,24558075-24558152,
           24558274-24558294
          Length = 583

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 174 ERGVRDLQNMLAATPYLPEPETVDKHLLELFVRGCRMDLDRA 299
           ER V    + LAA   LP+    D H++  F++  + D+DRA
Sbjct: 66  ERAVAAFHDRLAAHGLLPDKHD-DYHMMLRFLKARKFDIDRA 106


>08_02_0925 -
           22668875-22668889,22668942-22669018,22669383-22669500,
           22669662-22669685,22670067-22670360,22670456-22670563,
           22671098-22671946
          Length = 494

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 WQPLLTYQNQKLLTNIYWSYSSEDVEW 285
           W PLL  +  + LT  +W YS  +VE+
Sbjct: 113 WLPLLAAKGVQTLTLSFWDYSDVNVEY 139


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 162 PGDLERGVRDLQNMLAATPYLPEPETVDKHLLELF 266
           P  L   V  L ++  A P LP P T D H L+LF
Sbjct: 6   PPSLSTPVTILPSVSVALPPLPPPATDDFHWLDLF 40


>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/88 (26%), Positives = 37/88 (42%)
 Frame = +3

Query: 108  QGPSLKQAEVIKQELGEGPGDLERGVRDLQNMLAATPYLPEPETVDKHLLELFVRGCRMD 287
            +G  L   E +K EL      L     +L+        L E ++V ++L E    GC+ +
Sbjct: 1365 RGVDLSTYETMKDELQNIKATLRENSAELER---TKKLLSEKDSVIRNLEEKLA-GCQSE 1420

Query: 288  LDRARSKLEAFCIARKRHRDLYEYISLN 371
            LD    KL     + K   D +  I++N
Sbjct: 1421 LDAREKKLNDVEASLKSEIDRHRKININ 1448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,550
Number of Sequences: 37544
Number of extensions: 407522
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)