Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F14
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.77 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = -2

Query: 399 IYKHR*EEVRSKICIRRGPYDVCELYKMLPVLI*PDPSPFDILGRIAPIDV 247
           +Y+   ++V  ++     P D CE++  + +L     +  +I  RI P++V
Sbjct: 395 LYQMIPKQVADRLRNGENPIDTCEMFDSVSILFSDVVTFTEICSRITPMEV 445


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 246 KHLLELFVRGC-RMDLDRARSKLEAFCIARKRHRDLY 353
           ++L E F   C ++D+ +  +  +A+C+A   HRD Y
Sbjct: 517 QNLYEQFDSFCGQLDVYKVETIGDAYCVACGLHRDTY 553


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 575 KHVPGYKCFVLHTSV 531
           K +P Y C VLHT+V
Sbjct: 78  KRIPLYVCRVLHTTV 92


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +2

Query: 353 RIHIFERTSSQ-----RCL*IL*HRNSSKTDR*RFENNCIHNKTRIPREFC*CDGSSSRH 517
           R H F+ TSS+     RC     +R   K DR ++E   +HN+     E        SR 
Sbjct: 220 RTHDFQHTSSRYSRERRCSRDR-NREYRKKDR-QYEK--LHNEKEKLLEERTSRKRYSRS 275

Query: 518 ITLERRSYEGRNTYNRGR 571
              E+RSY+  N+Y + R
Sbjct: 276 REREQRSYKNENSYRKYR 293


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 226 QNQKLLTNIYWSYSSEDVEWTW 291
           +NQ L+TN++      DV   W
Sbjct: 66  KNQLLITNLWLKLEWNDVNMRW 87


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 516 WRELLPSH 493
           W+EL+PSH
Sbjct: 633 WKELIPSH 640


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 602 ITXGSGRCGCRCNQTRHPTRTGGLPSXAQKDPRR 703
           +T  SG     CN  ++ T  G + S     P+R
Sbjct: 143 VTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQR 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,618
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)