Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F06
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.6  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   3.4  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   3.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   3.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.8  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 219 PFIIGYLIYEGVEREHHRLSRKNPADFEND 308
           P  +G   Y   +  HH L  + P D   D
Sbjct: 40  PLSLGMSPYASSQHHHHHLQARPPQDSPYD 69


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 354 LISTLNNFNLQTMFIDHFQ--NQQGSSVIVCDAPFQLLHI 241
           +++T+   N     +++ +   +  SS +V +  FQL+H+
Sbjct: 76  ILTTITKRNQWCKLLENLKLDRENNSSFVVANVLFQLIHV 115


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 354 LISTLNNFNLQTMFIDHFQ--NQQGSSVIVCDAPFQLLHI 241
           +++T+   N     +++ +   +  SS +V +  FQL+H+
Sbjct: 76  ILTTITKRNQWCKLLENLKLDRENNSSFVVANVLFQLIHV 115


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 354 LISTLNNFNLQTMFIDHFQ--NQQGSSVIVCDAPFQLLHI 241
           +++T+   N     +++ +   +  SS +V +  FQL+H+
Sbjct: 396 ILTTITKRNQWCKLLENLKLDRENNSSFVVANVLFQLIHV 435


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 264 HHRLSRKNPADFEND 308
           H+ LS KNP + EN+
Sbjct: 218 HNLLSDKNPPNTENN 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,265
Number of Sequences: 336
Number of extensions: 1767
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)