Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F06
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127...    30   1.1  
05_07_0042 - 27265687-27267159                                         29   2.0  
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866...    28   4.5  
01_06_0624 - 30683249-30684631                                         28   4.5  
06_01_0779 - 5823389-5823787                                           27   7.9  
01_05_0225 - 19501643-19501903,19503974-19504477                       27   7.9  

>12_01_1041 -
           10711362-10711428,10711571-10712262,10712622-10712777,
           10712885-10713957,10714422-10714524,10714694-10714876,
           10715007-10715099,10715379-10715564,10716530-10716793
          Length = 938

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 215 GYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS 90
           G+F N L +     R+ + N+ SI SL    Y +G   P+F+
Sbjct: 310 GFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFT 351


>05_07_0042 - 27265687-27267159
          Length = 490

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 187 LLKILGIPFEIAPAYARCSWADIL 116
           ++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201


>02_04_0414 -
           22685981-22686178,22686374-22686465,22686580-22686676,
           22686801-22686916,22687314-22687513,22687588-22687740,
           22687960-22688171,22688403-22688519,22688613-22688687,
           22688815-22688853,22689518-22689689,22689809-22690056,
           22690151-22690324,22690418-22690504
          Length = 659

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 175 ISSEDFVRAFLK*PRPSSLDT*YMKELKGSITDYHGRTLLILKMINK 315
           I  E F+R +L      S  T   K+LKGS++     T  +L +IN+
Sbjct: 80  IEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINE 126


>01_06_0624 - 30683249-30684631
          Length = 460

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 265 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 167
           C+ +  SY+  P+M+   +   + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153


>06_01_0779 - 5823389-5823787
          Length = 132

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 178 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 80
           +LGIP       +RC W     VT PR++ S+P
Sbjct: 67  VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97


>01_05_0225 - 19501643-19501903,19503974-19504477
          Length = 254

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 272 SVMLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 162
           S +LP+   +  VSN+E +      + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,130
Number of Sequences: 37544
Number of extensions: 173433
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)