Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F06
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       28   3.5  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_32937| Best HMM Match : MFS_1 (HMM E-Value=5e-35)                   27   8.0  
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)                       27   8.0  

>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 245 IYQVSNDEGRGYFKNALTKSSEDIRNT 165
           +Y+ +ND G  YFK+   +++ D R +
Sbjct: 55  VYRAANDNGESYFKSIFKRAANDNRES 81



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 257 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSI 144
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 17  FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 54


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 257 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSI 144
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 166 FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 203


>SB_32937| Best HMM Match : MFS_1 (HMM E-Value=5e-35)
          Length = 482

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 248 FIYQVSNDEGRGYF--KNALTKSSEDIRNT 165
           F Y + + EG+G+F  K+ L +S + I+NT
Sbjct: 397 FFYGIYDSEGKGFFCRKSCLEESKQVIQNT 426


>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
          Length = 512

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -3

Query: 212 YFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVFAHSGELLTSKFCN 33
           Y K++ T   + + + + +S    S     YL   K       S+ F+HSG+ LT+    
Sbjct: 323 YIKDSATADGKSLESNVASSGEADSFLRVTYLKDQKLK-----SEAFSHSGDQLTTAEWE 377

Query: 32  KILRNIPS 9
           + +++ P+
Sbjct: 378 QTMKSSPT 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,153
Number of Sequences: 59808
Number of extensions: 197523
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)