Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F06
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    62   2e-10
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    60   6e-10
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   2.3  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   2.3  
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    27   5.3  
U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 63  TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYL 239
           +MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +   P  I  YL
Sbjct: 7   SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66

Query: 240 IYEGVEREHHRLSRKNPADFENDQ 311
           +Y+  ++ +   +RKNPADF NDQ
Sbjct: 67  LYDWAKKTNVAANRKNPADFANDQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +3

Query: 66  MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYLI 242
           MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +   P  I  YL+
Sbjct: 8   MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 243 YEGVEREHHRLSRKNPADFENDQ 311
           Y+  ++ +   +RKNPADF ND+
Sbjct: 68  YDWAKKTNVAANRKNPADFANDE 90


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 244 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 155
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 244 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 155
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 34  LQNLEVRSSPLWANTLEN*LKFGVLSPTRYLPMN 135
           +QNL +RSSP WAN +   L  G   P   LPM+
Sbjct: 232 VQNL-IRSSPYWANYITA-LPMGTQLPMMGLPMS 263


>U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical
           protein F11D5.7 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -2

Query: 357 KLISTLNNFNLQTMFIDHF---QNQQGSSVIV 271
           K++STLNN+N++  F++      NQ G+++ +
Sbjct: 64  KILSTLNNYNVRLSFVNSIITTSNQVGNALSI 95


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 248 FIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVFA 69
           ++ + S  E  G  +N   K  E I  +  N  + CS+  G   + +KTP+ S  S +  
Sbjct: 84  YLSEYSKIEVSGNLENCGCKGGE-IEISTKNQFANCSVLYGGLQIFNKTPDLSALSNIEI 142

Query: 68  HSGEL 54
             GE+
Sbjct: 143 IKGEI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,255,942
Number of Sequences: 27780
Number of extensions: 161861
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)