Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_F03
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    96   3e-21
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.94 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.2  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   2.9  
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    26   5.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
 Frame = +3

Query: 75  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 254
           GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +K    A 
Sbjct: 11  GRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGAR 70

Query: 255 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFK 431
           + +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K
Sbjct: 71  SGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAK 130

Query: 432 SLK 440
           +LK
Sbjct: 131 ALK 133


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 368 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 270
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 506 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 360
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 255 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 434
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K 
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760

Query: 435 LKVKAARA 458
           +  ++A A
Sbjct: 761 MSRESAHA 768


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 544 YFLAGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTR 392
           YF++ ++ +  + +F   + G+           F F +  TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 75  GRVALVADGPLKGKLVSVVDVIDQ 146
           G+VAL+  G   GK V ++  IDQ
Sbjct: 8   GKVALITRGRFAGKKVVILQAIDQ 31


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 157 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 258
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,288
Number of Sequences: 5004
Number of extensions: 47254
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)